Detailed information on CNT30224238


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30394048Hordeum vulgareTriticum turgidum36.0321.1386.67165forward
CNT30666056Hordeum vulgareTriticum dicoccoides35.5917.1692.02163forward
CNT30684973Hordeum vulgareTriticum urartu27.0733.0789.52124forward

Expression of CNT30224238

Peptides detected in this lncRNA

>peptide 1 (42 aa)
RFAKKKKNNGGPEGTSHHRLHYWAKQGIFSAHDDALTGSQLS*

>peptide 2 (35 aa)
MRSRRRTCSDQMDMLFGMPLAVSPSACPVWSEVLG*

>peptide 3 (35 aa)
GLPRRRKTTEGRREHHTIDFIIGQNKGFFLHTTMH*

>peptide 4 (38 aa)
EVCQEEEKQRRAGGNITPSTSLLGKTRDFFCTRRCIDR*

Sequence

>CNT30224238
GAGGTTTGCCAAGAAGAAGAAAAACAACGGAGGGCCGGAGGGAACATCACACCATCGACTTCATTATTGGGCAAAACAAGGGATTTTTTCTGCACACGAC
GATGCATTGACCGGTAGCCAGCTGAGCTGAGCTTCCGCATGCCGATCAGACCCGTCGTGCACGCACCCTTATTGCCTTAATTATTCATGCACCGGCACAA
CTCTCTGTCACACACACACACACAAGCTAGCTCCGGTGTAAGCAAGCAAGGATAGCACAAAAGCATGAGGTCTCGACGACGGACGTGCTCAGATCAGATG
GATATGCTGTTCGGGATGCCCCTGGCGGTGAGCCCCTCGGCCTGTCCCGTGTGGTCGGAGGTGTTGGGGTAGAGCAGCATGTATGGAAAGTGGACCGGTC
CATTGCGGTTCTTGAGCTGGGGGTTTCCGTTCAAGGCGACCACCTCGCTCTCGATGCC