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Detailed information on CNT30117292


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENB0|NU5C_ORYNI, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30202335Oryza nivaraPisum sativum14.1161.0883.94193forward
CNT30605383Oryza nivaraGossypium raimondii42.0385.0679.65575forward
CNT30152376Oryza nivaraPrunus persica50.3747.2284.33689forward

Expression of CNT30117292

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MKLIIKGRDMKRGRSRAIRKIPAATIVAACIRAEMGVGPSIASGNHT*

>peptide 2 (29 aa)
DKTKSLLTPLDILFPHNDIEYNESSLVLL*

Sequence

>CNT30117292
TGATAAAACGAAATCTCTATTGACTCCTTTAGATATCCTTTTTCCCCATAACGATATTGAATACAACGAATCCTCTTTAGTACTACTGTAATTTTGAAAA
TGAACACGCAAATACCCATCAAAAGTAAGTAAATATATCCGAAACATATAAAACGCAGTTAATCCTGCAGTAAAAGAAGCTATTATTCCAAAAAAGGGTG
AATATAACCAACTATTACTAAGGATTTCATCTTTGGACCAGAAGCAAGCAAGAGGTGGAATACCACAAAGAGAAAGGGTACCCCATAAAAAACAAGTTCT
TGTAATTGGAATGTATTTTCTTAAACCACCCATAAGAACCATATTCTGACTTTTATCTGGTGAATATCCAACAAGAGGTTCCATTGAATGAATAACAGAT
CCGGATCCCAAGAATAATAAAGCTTTCGAATAAGCATGAGTGATCAAATGGAATAAAGCAGCTTGATAAGAACCTATACCTAGAGCTAACATCATATAAC
CCAATTGAGACATTGTAGAATAGGCTAAGCTTCTTTTAATATCTCTCTGAGCAAGAGCTAAAGTGGCTCCTAAGAAAAGTGTTAGTGTACCTATTAAAGA
AATGAAACTCATTATCAAAGGTAGGGATATGAAAAGAGGAAGAAGTCGAGCTATAAGAAAAATCCCCGCAGCAACCATAGTTGCTGCGTGTATAAGAGCT
GAAATGGGGGTGGGTCCTTCCATAGCATCGGGTAACCATACGTGAAGAGGGAATTGTGCCGATTTCGCAACTGCACCAAGGAATAATAAAAAAGCACACA
AAATAGTAAGCAAGGAGTTAATCTCATTATTAGGAATCCAGTTATTAGCTATTTTAAACAAATCCCGAAACTCTAAACTACCTGTTATCCAAAAAAANAT
AGACAAAAGTGTTTTTAGTCCCCAATGAAGTACTAAAGGACCCTATCCTATTTCCTGTATTAACATGAATTTTGGATAGATTTTGTGAAAAAAAAGAAAC
TCCACTCTTCGCTGTTGATAAAACGAAATCTCTATTGACTCCTTTAGATATCCTTTTTCCCCATAACGATATTGAATACAACGAATCCTCTTTAGTACTA
CTGTAATTTTGAAAATGAACACGCAAATACCCATCAAAAGTAAGTAAATATATCCGAAACATATAAAACGCAGTTAATCCTGCAGTAAAAGAAGCTATTA
TTCCAAAAAAGGGTGAATATAACCAACTATTACTAAGGATTTCATCTTTGGACCAGAAGCAAGCAAGAGGTGGAATACCACAAAGAGAAAGGGTACCCTA
GTCAGTGGTCATAAAAATTTGCATCGGTATTCAGTTCCCATTTACTACCATACTTCTGTAGGATCGTA