CANTATAdb - search

Detailed information on CNT30193849

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3075230	Secale cereale	Brassica juncea	20	7.87	85.44	103	forward
CNT30578317	Secale cereale	Oryza barthii	57.86	61.57	92.62	298	forward

Expression of CNT30193849

Peptides detected in this lncRNA

>peptide 1 (50 aa)
SLRACTQASKATRLAAAPGAFPQGCPKVPPPNCNTESSPKISVRAGICQT*

Sequence

>CNT30193849
TTCGTTACGAGCTTGTACACAGGCTTCTAAAGCCACTCGATTAGCTGCTGCACCAGGTGCATTTCCCCAAGGATGTCCTAAAGTTCCTCCACCAAATTGT
AATACAGAATCGTCCCCAAAGATTTCGGTCAGAGCTGGCATATGCCAAACATGAATACCACCTGAAGCTACCGGTATAACACCTGGTAAGTAGTCATGCA
TTACAATAGGAACCCCTAATTCTCTTGCAAATACAGCTCTCTTAATCATTTCTTCACATGTACCCGCAGTCGCATTCAAGTAATGCCCCTTGATTTCACC
GGTTTCGGCCTGTGATTTATAAATAGCTTCGGCACAAAAGACAAAACGGTCTCTCCAGCGCATAAATGGTTGTGAGTTTACGTTTTCATCATCTTTGGTA
AAATCAAGTCCACCACGTAGACACTCATAACACGCTCTACCATAATTTTTTGCGGATAATCCCAATTTTGGTTTAATAGTACATCCCAATAAAGGACGAC
CATACTTGTTCAACT