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Detailed information on CNT3075230


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30193849Brassica junceaSecale cereale7.872085.44103forward
CNT30225662Brassica junceaHordeum vulgare7.8733.7785.44103forward
CNT30443410Brassica junceaAegilops tauschii6.0429.0487.3479forward
CNT30265852Brassica junceaBrassica rapa33.3810099.08437forward
CNT30477828Brassica junceaArabidopsis halleri7.8720.2494.17103forward
CNT30578317Brassica junceaOryza barthii7.4120.0485.5797forward

Expression of CNT3075230

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MIGNSIRLLIGYIKLSSGKHCNQIHTNSIEF*

>peptide 2 (29 aa)
HIGPINWCNSIHPNNQLSKFKIRVVTLLP*

>peptide 3 (34 aa)
MCIHTIIVKLMIIKLCKETLLKAIHDFLSLIYDW*

Sequence

>CNT3075230
ATCATATTGGGCCTATAAATTGGTGTAATTCTATACATCCAAATAATCAACTGAGTAAGTTCAAAATTCGTGTGGTTACGCTTCTTCCATAACAGAAGTA
GGGCTAGACGTGTCGGAGGAAGAGGAACCCCTTCTGCTCGAGCTCGCCTTAGAATGGATTCCTCGTCAAGTCTGTTTGGAGGGTGTGGACACACTTAATT
GTTTGTATTTCGTTCATTCCATCGGTATGCTCCCAGGCATTCCTGGTCATTGAGCCGGTCACCGGTGGCTTCCTCACTTGTAATGTGAAGCTGTTTTCCA
TTTCTCATTTTTGAGGATATCAAAATTCTCTCTGGCAAATACAACTATTTTGATCATTTCTTCGCATGTACCCGCAGTAGCATTCAAATAATGCCTTTTG
ATTTCACATGTTTCAGTCTGTGCTTTATAAAATATTACCTCTTTTTTTTTTGATCAACTGAATAATTCATTAATTAAAAAGGGGATTAGTGTGAAATTAG
GCCCAACAGAAAGAGTTTGGTACAAAAAGAAGCCTTAGCATAAGAATTTGCAGGCCCATTAAACGATCTAGGAATGAAAGAAGCTTGAAACGAAGAAAAC
GAAGAAGATAGGATGAGCGATTCAATGTCAGCTAGAACTCCATCGTTGTCTCGCGCTGATAGACTGGATGAGTCCTTTGCAATCTGATCGTAGCCAGATG
TAATCAAAGTTGAGTGAAGTAGCATGCTCAATGGCTGCTCTAAACGCTAGGGCTTCCGCCATAAGCGGGGAGGAAACATGATCCGACATGATGCAACATG
AAGCAGTGAATGCTGATGTGAGCTCACGTGGCGTCCATTTAATTTAAGTGGAACCGACTCTTAGTGCTTTCATAGGGTTATTATTGGGACCCATCTATGA
TTCTTAAAAGAGTGGGCTCCTTCTTCTGACAGTAACAAAGAGATTAGATTCTGCTCTCACGGACGGTCACGATGATATGATGGATTGTGTTGACGAGCCA
TGACACGACTCGTGATGCTTCATTAGTTCTCTAATGTGCATTCACACTATTATAGTCAAATTGATGATTATCAAGCTTTGCAAAGAAACACTGCTTAAAG
CCATTCATGATTTCTTGTCCCTAATCTATGATTGGTAATTCAATTAGATTGTTAATTGGTTACATCAAATTATCTAGTGGAAAACACTGTAACCAAATCC
ATACAAATAGTATAGAGTTTTAGGTGGATGTGCAGTGTATATATTTTACACGGTTAAGTCCCCTCTATAGTGGTTTCAAAAAGTTGATGGAGTCAATGTG
TTTTTAATT