« Back to Oryza barthii search


Detailed information on CNT30578317


BLAST search results

BLAST vs Swiss-Prot:
sp|A8Y9H8|RBL_LOLPR, E-value = 8e-52

BLAST vs NONCODE:
NONORUT000578, E-value = 1e-93

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690840Oryza barthiiOryza sativa61.576.4595.64298forward
CNT30678279Oryza barthiiSetaria viridis100.4156.6493.21486forward
CNT30201083Oryza barthiiPisum sativum61.5713.9685.57298forward
CNT30193849Oryza barthiiSecale cereale61.5757.8692.62298forward
CNT30303870Oryza barthiiTriticum aestivum61.5732.9392.28298forward
CNT30225281Oryza barthiiHordeum vulgare46.0766.5791.93223forward
CNT30565170Oryza barthiiActinidia chinensis60.9525.8385.08295forward
CNT3089355Oryza barthiiVigna radiata45.6637.0883.26221forward
CNT30539441Oryza barthiiBrassica napus88.648.7885.08429forward
CNT30239038Oryza barthiiBrassica oleracea61.5723.985.23298forward
CNT30554212Oryza barthiiOryza glaberrima61.577.995.64298forward
CNT30146680Oryza barthiiMedicago truncatula52.0720.1184.92252forward
CNT30444216Oryza barthiiAegilops tauschii64.6761.9893.61313forward
CNT30257373Oryza barthiiAvena sativa40.0829.2295.88194forward
CNT3059817Oryza barthiiArabidopsis lyrata80.1767.2486.86388forward
CNT3075230Oryza barthiiBrassica juncea20.047.4185.5797forward
CNT30265852Oryza barthiiBrassica rapa20.0422.285.5797forward
CNT302912Oryza barthiiZea mays61.5737.292.28298forward
CNT30606537Oryza barthiiGossypium raimondii28.18.0983.82136forward
CNT30682029Oryza barthiiTriticum urartu61.5728.2592.62298forward
CNT30477828Oryza barthiiArabidopsis halleri88.6484.2885.08429forward
CNT30355674Oryza barthiiLactuca sativa61.1640.1183.78296forward
CNT3058691Oryza barthiiAmborella trichopoda40.0843.484.54194forward
CNT30121217Oryza barthiiCitrus clementina49.3826.6483.68239forward
CNT30100001Oryza barthiiOryza rufipogon40.0875.1997.42194forward

Expression of CNT30578317

Peptides detected in this lncRNA

>peptide 1 (37 aa)
NHRAINQQNLKSFRVPLLTYLLLYQCGYDLPQTPAML*

Sequence

>CNT30578317
AAATCATCGCGCAATAAATCAACAAAACCTAAAGTCATTCCGCGTTCCCCTTCTAACTTACCTATTACTGTACCAGTGTGGATATGATCTCCCCCAGACA
CCCGCAATGCTTTAGCTAATACACGGAAATGCATACCATGATTTTTCTGTCTATCAATAACTGCATGCATTGCTCGGTGAATGTGAAGAAGTAGTCATGC
ATTACAATAGGAACCCCTAATTTCCCTGCAAATACAACTCTTTTAATCATTTCTTCGCATGCACCTGCAGTCGCATTCAAGTAATGCCCCTTAATTTCAC
CGGTTTCGGCCTGTGATTTATAAATAGCTTCGGCACAAAAGACAAAACAATCCCTCCAACGCATAAATGGTTGAGTTTACGTTTTCATCATCTGTGGTAA
AATCAAGTCCACCGCGTAGACACTCATAACATGCTCTACCATAACTTTTTGCAGATAATCACAATTTTAGTTTAATAGTACATC