Detailed information on CNT30189318


BLAST search results

BLAST vs Swiss-Prot:
sp|P69326|UBIQ_WHEAT, E-value = 1e-47

BLAST vs NONCODE:
NONSTUT000620, E-value = 5e-22

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30239924Secale cerealeAvena sativa52.1175.5590.29309forward
CNT30686456Secale cerealeTriticum urartu39.4679.3294.87234forward

Expression of CNT30189318

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MSRHLLATTQAEHQVKGRLLLDVVVSQGAAILKLLAGKDEALLVRGDALLVLDLGLDIVDRVRRLDLKGDGLASEGLHEDL

>peptide 2 (41 aa)
MRRCWSGGMPSLSWILALTLSIVSDDSTSRVMVLPVRVFTKI

>peptide 3 (32 aa)
MKHTRAHAENSIGGHRPHQTCEPRDRSSTMTP*

>peptide 4 (92 aa)
AHINKENSKIWYLIMGKILPTLFNIPQYFKPVQCKNLQTNSNTGMAQTIQLHTILRVRLFIMYSSSKLQATSHHKFVDTTKRNRDETHQSTR*

Sequence

>CNT30189318
ATGCACACATAAACAAAGAAAATTCTAAGATTTGGTATCTAATAATGGGAAAAATCCTCCCAACTTTGTTTAACATACCTCAGTACTTCAAACCAGTTCA
ATGCAAGAATCTGCAGACAAATAGCAACACAGGTATGGCACAAACCATACAATTACACACGATATTAAGGGTTCGCTTATTCATCATGTATTCATCATCC
AAACTCCAAGCGACATCACATCACAAGTTTGTAGACACAACCAAACGTAACAGAGATGAAACACACCAGAGCACACGCTGAAAACTCCATTGGAGGACAC
CGACCGCACCAGACCTGTGAACCCAGAGACAGAAGCAGCACCATGACTCCATGAGCAGGCACTTACTGGCCACCACGCAGGCGGAGCACCAGGTGAAGGG
TAGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTT
GTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCAGACGACTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTG