Detailed information on CNT30239924


BLAST search results

BLAST vs Swiss-Prot:
sp|P69326|UBIQ_WHEAT, E-value = 2e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30189318Avena sativaSecale cereale75.5552.1190.29309forward
CNT30397916Avena sativaTriticum turgidum68.718.5291.81281forward
CNT30131032Avena sativaLolium perenne79.7167.9292.33326forward

Expression of CNT30239924

Peptides detected in this lncRNA

>peptide 1 (32 aa)
CTTAEVCRHTLYNTYHNTTAQIEGRPNHKTTQ*

>peptide 2 (81 aa)
MARRHLLATTEAEHQVEGRLLLDVVVSKGTAILKLLASKDEALLVRRDALLVLDLGLHIVDGIRGLNLKGDGLAGEGLHKDL

>peptide 3 (46 aa)
MRAPLEHTDSTRLVNPKNKAAPWLGGTYWPPRRRSTKWRVDSFWML*

>peptide 4 (42 aa)
MRRCWSGGMPSLSWILAFTLSMVSEDSTSRVMVLPVRVFTKIC

Sequence

>CNT30239924
CTGCACCACAGCAGAAGTTTGTAGACACACGCTTTATAACACCTACCACAATACGACAGCACAAATAGAGGGACGACCAAATCATAAGACGACACAATGA
GAGCTCCACTGGAGCACACCGACAGCACCAGACTTGTGAACCCAAAGAACAAAGCAGCGCCATGGCTAGGAGGCACTTACTGGCCACCACGGAGGCGGAG
CACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGA
GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTATCAGAGGACTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAA
AGATCTGCA