CANTATAdb - search

Detailed information on CNT30182501

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30384324	Secale cereale	Triticum turgidum	24.62	5.46	95.31	192	reverse complement
CNT30661765	Secale cereale	Triticum dicoccoides	24.62	46.6	94.27	192	reverse complement
CNT30684282	Secale cereale	Triticum urartu	26.03	37.25	97.54	203	forward

Expression of CNT30182501

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MFTSQAINPYKIVSLVPIENYQMIRTTKQNTENLVQQK*

>peptide 2 (93 aa)
QILQIISYFSTKYVYITGHKSLQNSITCSYRKLSNDTYNKTKYRKFSSTKIGFLPLPSSRTHNTCENKDATTKMEGLASRSILNTRETIKLKK*

>peptide 3 (30 aa)
MALSHTQTSEALTCEDQTNKAKNKNSTKLV*

Sequence

>CNT30182501
GACAAATTTTGCAAATAATTTCATATTTCAGCACTAAATATGTTTACATCACAGGCCATAAATCCCTACAAAATAGTATCACTTGTTCCTATAGAAAACT
ATCAAATGATACGTACAACAAAACAAAATACAGAAAATTTAGTTCAACAAAAATAGGTTTTCTTCCTCTTCCATCTTCCAGAACACACAACACCTGTGAA
AATAAAGATGCCACAACAAAAATGGAAGGATTAGCCAGTAGAAGCATATTGAATACAAGGGAAACAATCAAACTAAAGAAATGAAAGGCACGCAATGTGA
AAAATTTGACAGCACGAATATTTTTTATATTACCATAACAAACAGAAATGTAATCTGATTGCACAAGACACATGGCATTATCACACACCCAGACGAGCGA
AGCATTAACTTGTGAGGATCAGACAAACAAAGCTAAAAATAAAAATTCCACGAAGCTAGTGTAATCTGTTGGAACTAGTTTGTCTATTACTTGTATCCAG
ATTAGGTACCATAGGTATTGATATGTAGTAGAGTTGCCTTAACTAATATATTGTGCTAGCTAGTGTAATGAGATGGATGCAAACTCAGAATCTTTCTTAG
CTTAAATAAGAGAAGATGGAAAAAAGAGCAGAGTCGAAGCAGGGGTGGATTGGAAGAAGTATCGCTTTGTTGAAGCGATGCAAGGCTTGGCTTGGGTGAC
TAGCAGGTCCAATGCTGAACATGAGGAGCGATAGTGACAGCCCCACTGAACATGAGGAGCCATCTGTTATTGAACATGAG