Detailed information on CNT30177602


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30300315Secale cerealeTriticum aestivum53.78.5690.34290forward
CNT30689346Secale cerealeTriticum urartu54.8124.3293.58296forward

Expression of CNT30177602

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MKLMDVWVAPRLVHVEFTLNLSTDGEVRLDDRGCYSALMCTQRVPGPDLKQGYLWLQAINI*

>peptide 2 (46 aa)
ETYGCVGGTKACSCGIHPQLVNRRRSAAGRSRLLFCLDVHTKSSWT*

>peptide 3 (50 aa)
MLNNMLLICSYILKCCLPLTFFLHLLYSQIVVVSGLDKQTSSSMHWLSTIN

>peptide 4 (31 aa)
MPLLPVGWSIHYCSVTCLFRNSLLGPSYLTM*

>peptide 5 (33 aa)
MCGWHQGLFMWNSPSTCQQTAKCGWTIEAAILP*

Sequence

>CNT30177602
ATGAAACTTATGGATGTGTGGGTGGCACCAAGGCTTGTTCATGTGGAATTCACCCTCAACTTGTCAACAGACGGCGAAGTGCGGCTGGACGATCGAGGCT
GCTATTCTGCCTTGATGTGCACACAAAGAGTTCCTGGACCTGACTTGAAGCAAGGATACCTATGGCTGCAAGCCATAAATATTTGAAGACATGTGCTGCT
TGTCTATCATTCTATGTTAAGTGATTATCTTTATGCCCTTGCTACCAGTAGGATGGTCAATACATTATTGCTCTGTAACTTGTCTTTTCCGAAATAGTTT
GCTTGGTCCTTCATATCTGACTATGTAATGTAGAAGCTCTACTTTATCCTAATAGCTGCTTGTAGCATTGTGATACTGTTTGTGTGATGCTAAACAATAT
GCTCTTAATCTGTTCATATATTCTCAAGTGTTGTTTACCACTTACATTCTTTTTACATTTGCTATATTCACAAATAGTAGTAGTGTCTGGTCTAGATAAG
CAAACAAGTAGTAGCATGCATTGGTTGAGTACTATAAATT