Detailed information on CNT30176309


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3042748Vigna angularisPrunus dulcis15.1524.2288.5770forward
CNT30120255Vigna angularisCitrus clementina17.5327.4685.1981forward

Expression of CNT30176309

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MNHAYLCFNKFFSVSEYRKFKQINKRYINNSSNKSLAEVIGTCFTWQLLLLFLRHCFNLPSVLNHLDEKGMALITT*

>peptide 2 (41 aa)
TCSKYSEQKLIDFALQFCTHLNNQNKVALYIFHPHKTKFHL*

>peptide 3 (53 aa)
MFYMAITTFIFEALLQFTLSVESLGREGDGPDHYLMVQSCKCCSNERPNPKNPL

Sequence

>CNT30176309
ACTTGCTCCAAATATTCAGAACAAAAATTAATCGACTTTGCATTACAATTTTGCACTCATCTTAACAATCAAAATAAAGTTGCGCTGTATATATTTCATC
CACACAAAACAAAGTTCCATTTATGAAGCATTTTCTTTCTACTTTGTGTAGGGATGCTCTTAAAAATAGAGAGAAATGAACCATGCTTACCTCTGTTTCA
ACAAGTTCTTTAGCGTATCCGAATACAGGAAATTTAAACAGATAAATAAAAGATACATTAACAATAGTAGTAATAAATCATTAGCAGAAGTGATAGGAAC
ATGTTTTACATGGCAATTACTACTTTTATTTTTGAGGCACTGCTTCAATTTACCCTCAGTGTTGAATCACTTGGACGAGAAGGGGATGGCCCTGATCACT
ACCTGATGGTACAAAGCTGCAAGTGCTGCTCCAATGAAAGGCCCAACCCAAAAAATCCACTG