« Back to Medicago truncatula search


Detailed information on CNT30147127


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 1e-102

BLAST vs NONCODE:
NONMTRT002043, E-value = 1e-114

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30171998Medicago truncatulaTrifolium pratense99.5696.5790.89450forward

Expression of CNT30147127

Peptides detected in this lncRNA

>peptide 1 (35 aa)
GPSILQLLPSKDQPLLIWWDSFLVLDFCLHIINCV*

>peptide 2 (41 aa)
SFHPPIASQQRSTSADLVGFLPCPGFLPSHYQLCLNFLPLR*

>peptide 3 (61 aa)
MSLCWSGGIPSLSCILALTLSMVSELSTSRVIVFPVRVFTNICIPPRRRSTKWRVDSFWML*

Sequence

>CNT30147127
GGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATTTTTGCCTTCACATTATCAATT
GTGTCTGAACTTTCTACCTCTAAGGTGATGGTCTTACCGGTCAACGTCTTTACAAAGATCTGCATACCTCCCCTCAGACGAAGGACAAGGTGAAGGGTGG
ACTCTTTCTGAATGTTGTAATCAGCCAAAGTTCTGCCATCTTCAAGCTGTTTTCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTC
TTGTATCTTGGCCTTAACATTGTCAATGGTATCAGAGCTCTCCACCTCAAGGGTAATCGTCTTTCCAGTGAGAGTCTTCACAAATATTTGCATACCACCA
CGGAGACGGAGCACCAAATGGAGAGTGGATTCCTTTTGGATGTTATAATCAG