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Detailed information on CNT30171059


BLAST search results

BLAST vs Swiss-Prot:
sp|P08222|CB22_CUCSA, E-value = 4e-77

BLAST vs NONCODE:
NONMTRT001605, E-value = 1e-102

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30514020Trifolium pratenseJuglans regia39.826.4484.62234forward
CNT30417231Trifolium pratensePapaver somniferum46.9437.181.88276forward

Expression of CNT30171059

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MDQSCHLGRVGRQFHQEVRQQYGNPPQLPLG*

>peptide 2 (92 aa)
MTKDQNAPNISLILAHFPGTKFVAKAQALLLTGSAMWSARFSSGPFPVTIACTKNPNIENIANLPFLSSFTFNSAKASGSSAKPNGSKLPPG*

Sequence

>CNT30171059
TTTAGAAAAAGAGATTAAATTAATAGTGTAATTACAACTGACATGCTGGAAAAGATTTTGGAACAATGTAATAAGTATTTCACTCCTTAATTGGTACAAA
TATGACGAAAGATCAAAATGCACCAAATATATCACTAATTTTAGCTCACTTTCCGGGGACAAAGTTTGTAGCAAAGGCCCAGGCATTGTTGTTGACAGGG
TCAGCAATGTGGTCAGCAAGGTTTTCTAGCGGTCCCTTTCCCGTCACAATAGCTTGCACGAAGAATCCAAACATAGAGAACATAGCTAACCTACCATTCT
TGAGTTCCTTCACCTTCAATTCGGCAAAAGCCTCAGGGTCGTCAGCTAAGCCTAATGGATCAAAGCTGCCACCTGGGTAGAGTGGGTCGACAATTTCACC
AAGAGGTCCGCCAGCAATACGGTAACCCTCCACAGCTCCCATTAGGATAACTTGGACAGCCCAGATAGCAAGGATACTTTGTGCGTGGACTAAGCTTGNN
NNNNNNNNNNNNNNNNNNNNNCGCCTCTCCAAATTTGACACCATTGCGGGACAAGAGCTCTGGGAAGACACATCCCAAGGCTCCCAAC