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Detailed information on CNT30394143


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676534Triticum turgidumSetaria viridis17.1824.9488100forward
CNT3016825Triticum turgidumZea mays17.8735.7491.35104forward
CNT30597034Triticum turgidumOryza meridionalis9.2823.2892.5954forward
CNT30117954Triticum turgidumOryza nivara25.7710.8481.33150forward

Expression of CNT30394143

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MARMPRPGDAMVFCTCVQSSSSMSVQSSP*

>peptide 2 (45 aa)
MALPAGGVGLVHGQDAAPRRRDGFLHVRAKQQQHVSPVQSMSELY*

>peptide 3 (52 aa)
MDTLGAATWRATPHSAFLGRKEDLRRVADAMSFFLLLPFLLACLPLTSSSRC*

>peptide 4 (74 aa)
VHLDPGHDALLHQDVDDLLAVDGGLVERLLEEDGASRRWRWTRPWPGCRAPATRWFSARACKAAAACQSSPVHE*

Sequence

>CNT30394143
GTCCACCTTGATCCCGGGCACGACGCCCTGCTCCACCAGGATGTCGACGATCTTCTTGCCGTCGACGGTGGACTGGTAGAGCGTCTCCTCGAAGAGGATG
GCGCTTCCCGCAGGTGGCGTTGGACTCGTCCATGGCCAGGATGCCGCGCCCCGGCGACGCGATGGTTTTCTGCACGTGCGTGCAAAGCAGCAGCAGCATG
TCAGTCCAGTCCAGTCCATGAGTGAATTATACTAGTACGTGTAATTCGGCCGGCGAGAAGCTGCAGCGTACGTACCGCGGTCTTGACGAGCTCATCGTCG
TAGGCGCCGGCGCGGACGACCATGGACACCCTCGGGGCGGCGACCTGGCGCGCGACGCCCCATTCGGCCTTCTTGGGGAGGAAGGAGGACTTGAGGAGAG
TAGCAGATGCCATGTCCTTTTTTCTTCTTCTTCCTTTCTTGCTTGCCTGCCTGCCACTGACCTCAAGCTCAAGGTGCTAGCTATCCTCTCTGCCTCGCTG
AGGCCAATGGACTCATATTTGAATGGGTGGCACGAGGGGATATGAGGTGTGGGGTGGAGGTTTGGATGGCTCAATGTCTGGC