Detailed information on CNT30163304


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LT78|RD21C_ARATH, E-value = 2e-22

BLAST vs NONCODE:
NONTCAT002529, E-value = 3e-59

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30714323Pistacia veraMalus domestica golden38.2938.5184.33134forward
CNT30412746Pistacia veraPapaver somniferum2010.3785.7170forward

Expression of CNT30163304

Peptides detected in this lncRNA

>peptide 1 (49 aa)
QQHVSSLGQYEKSPHSLGEGEGGGGDGGGGGGGGGGGEEGAGADDSLVG*

>peptide 2 (55 aa)
GNNMSHHLGNMRSPHIHLVKAREVVGMVEVVVAEVAVVKRELVQMILWSDKRPLH*

Sequence

>CNT30163304
GGCAACAACATGTCTCATCACTTGGGCAATATGAGAAGTCCCCACATTCACTTGGTGAAGGCGAGGGAGGTGGTGGGGATGGTGGAGGTGGTGGTGGCGG
AGGTGGCGGTGGTGAAGAGGGAGCTGGTGCAGATGATTCTTTGGTCGGATAAGAGGCCATTGCATTGACCGCACATTCACCATATTCTAAGTCTGTGTTC
CTTTTAAGGTAGAAATATCCGTCCATTCCCCAACTTGTTCCCCAAGAATTCTTTACAATCCAATAATCTTCATCATCTTCAGAACCATAACCAACAATCA
AAACTGCATGATCAATCTCATCTGGATCGTCTGAGCAGTCACCAGCATAG