CANTATAdb - search

Detailed information on CNT30143311

BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 4e-158

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-162

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30641434	Lolium perenne	Nymphaea colorata	69.3	64.59	88.6	684	forward
CNT30370375	Lolium perenne	Oryza glumipatula	70.42	72.85	88.2	695	forward

Expression of CNT30143311

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICICRE*

>peptide 2 (50 aa)
WISEGRNDHSQTKTINKIDSKMTDYSKVPLFITTNCCTSKLLSRNQHIGS*

>peptide 3 (52 aa)
MRRCWSGGIPSLSWILALTLSMVSELSTSRVMVFPVRVFTKICIPPRRRRTR*

>peptide 4 (61 aa)
MRRCWSGGIPSLSWILAFTLSMVSELSTSRVMVFPVRVFTKICIPPRRRSTRWRVDSFWML*

Sequence

>CNT30143311
TATGGATTTCAGAAGGCAGAAACGACCATTCACAAACTAAAACAATAAATAAAATCGACAGTAAAATGACAGATTACTCCAAAGTTCCTTTATTCATTAC
CACGAACTGCTGTACCAGCAAACTGTTATCACGAAACCAACACATAGGGAGCTGATGGTCCATTAAACCAGGCACAATAGACTTGACACAAACGAGAGTA
CGGGACAGACACTTCACTTGTAGGGCTACAAGGACAGCCCACCGGACAACACGAGACACTTACTGACCACCGCGAAGGCGGAGCACCAGGTGGAGGGTGG
ACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATCCCCTCCTTGTC
CTGGATCTTGGCCTTCACGTTGTCAATGGTATCCGAGCTCTCAACCTCCAGGGTAATGGTCTTCCCAGTCAGGGTCTTCACAAAGATCTGCATACCACCA
CGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATGAGGCGCT
GCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGAGTGATGGTCTTCCCAGTCAG
GGTCTTCACGAAGATCTGCATACCACCACGTAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTCCTGCCGTCCTCC
AGCTGCTTGCCAGCAAAGATAAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATTTTAGCCTTAACATTGTCGATGGTATCTGAGGACTCCA
CCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCTGCAGAGAATAATAACCAAATAGAATGGTAAGCCTCA