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Detailed information on CNT30370375


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 3e-158

BLAST vs NONCODE:
NONMEST001181, E-value = 6e-103

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672296Oryza glumipatulaSetaria viridis72.4385.187.55691forward
CNT30519947Oryza glumipatulaSetaria italica69.8176.3886.34666forward
CNT30190365Oryza glumipatulaSecale cereale69.2962.0188.5661forward
CNT30586586Oryza glumipatulaMusa acuminata72.4348.5986.25691forward
CNT30254194Oryza glumipatulaAvena sativa72.6473.7289.75693forward
CNT30143311Oryza glumipatulaLolium perenne72.8570.4288.2695forward
CNT30229549Oryza glumipatulaAnanas comosus72.2272.9185.34689forward
CNT30364163Oryza glumipatulaSorghum bicolor72.8575.7185.61695forward
CNT30149632Oryza glumipatulaBrachypodium distachyon69.7169.3487.67665forward
CNT30576485Oryza glumipatulaOryza barthii97.5999.8999.68931forward
CNT30583684Oryza glumipatulaEchinochloa crusgalli72.8533.1186.62695forward
CNT30604148Oryza glumipatulaOryza punctata77.8887.8392.46743forward

Expression of CNT30370375

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MTQQMFGQQYSTFKRTRWSTNSTNKVFTRIMQTQDNSTAAIPSINDY*

>peptide 2 (44 aa)
MRRCWSGGIPSLSWILAFTLSMVSEDSTSRVMVLPVRVFTKICIC

>peptide 3 (61 aa)
MSLCWSGGMPSLSWIFAFTLSMVSELSTSRVIVLPVRVLTKICIPPLRRRTRWRVDSFWML*

>peptide 4 (37 aa)
MVSELSTSRVMVLPVRVLTKICIPPLRRSTKCRVDSF*

Sequence

>CNT30370375
CACGCAGGCACTTTAATCTGAAATGTAGGCAAATTTGAATGAAGAGTTGTAATGGGTGCAGAACTATAAGCAAATTTAGCAACGCAGATTAATAGTTTAC
TTATTAATTAGTTTAAACTGCTATGACCCAGCAAATGTTCGGACAGCAGTACAGCACATTTAAACGGACTCGATGGTCCACTAACAGCACAAATAAAGTT
TTCACGAGGATAATGCAGACACAGGATAACAGTACAGCAGCAATTCCATCAATCAATGATTACTGACCACCCCTGAGGCGGAGCACCAGGTGGAGGGTAG
ACTCCTTCTGAATGTTGTAGTCGGCGAGGGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATACCTTCCTTGTC
CTGGATCTTAGCCTTCACATTGTCGATGGTATCGGAGCTCTCAACCTCCAGAGTAATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCATACCACCC
CTGAGGCGGAGCACCAAGTGTAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCGAAGATGAGTCTCT
GCTGGTCCGGGGGGATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCTGAGCTCTCAACCTCCAGGGTAATTGTCTTGCCAGTGAG
AGTCTTGACGAAAATCTGCATTCCACCCCTTAGGCGCAGAACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCATCTTCG
AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTTACATTGTCAATGGTATCTGAGGACTCAA
CCTCAAGGGTTATGGTCTTGCCAGTGAGAGTCTTCACAAAGATCTGCATCTGCA