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Detailed information on CNT30138598


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 1e-174

BLAST vs NONCODE:
NONVVIT000384, E-value = 9e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30284133Lolium perenneTriticum aestivum66.9158.3586.31811forward
CNT30666211Lolium perenneTriticum dicoccoides63.2871.3585.53767forward

Expression of CNT30138598

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MGCPRKPAWLSRLSCALRHGPLRREPMVPHSSLPCRRRSRRKWTWWWSSLSF*

>peptide 2 (43 aa)
MACTKKPNMENMARRPFFSSFTLSSAKASGSSARPRGSKLPPG*

>peptide 3 (37 aa)
GAVLYNLVLKMPPEKLKCNIKNCITLLVKYKTEILRS*

>peptide 4 (36 aa)
MDEAGVAKVVESTLAEDLGASLEPHGLSKVDTVAGK*

Sequence

>CNT30138598
CGGAGCTGTACTATATAATTTAGTGCTGAAAATGCCTCCAGAGAAACTTAAATGCAACATCAAAAATTGCATAACTCTACTGGTCAAGTATAAAACAGAA
ATATTGCGCTCATAAAACACCAAAAGGCACGGACTTCAGAAAGAGGCATATTTTACATGAAAATCCTGGTAATTTACATCATCATGGTAGTACAGATCAA
ACCAAACGGTGTGTTCCGTGAAATACACCGTGTGTCCTGACACAACTACAACTCGCAGCCGTCAACAACTAATTACTTGCCGGGAACAAAGTTGGTGGCG
AAAGCCCATGCGTTATTGTTGACAGGGTCGGCAAGATGGTCGGCCAGGTTCTCTAGAGGGCCCTTACCGGTGACGATGGCCTGCACAAAGAAGCCGAACA
TGGAGAACATGGCGAGACGGCCATTTTTTAGTTCCTTCACCTTGAGCTCCGCGAAAGCCTCGGGGTCATCGGCAAGACCAAGGGGGTCGAAGCTGCCGCC
AGGGTAGAGTGGGTCGACGATCTCACCGAGCGGGCCACCAGCAACACGATACCCCTCGACGGCACCCATGAGCACAACCTGACAAGCCCAAATAGCGAGG
ATGCTTTGGGCATGGACGAGGCTGGGGTTGCCAAGGTAGTCGAGTCCACCCTCGCTGAAGATTTGGGAGCCAGCCTTGAACCACACGGCCTCTCCAAAGT
TGACACCGTTGCGGGCAAGTAGCTCGGGGAAGACGCAGCCAAGCGCACCGAGCATAGCCCACCTGGAGTGGATCACCTCCAGCTCACGGTTCTTGGCGAA
CGTCTCGGGGTCAGCCGACAGCCCAGCAGTGTCCCACCCATAGTCACCGGGGAACTCGCCGGTCAAGTAGCTTGGGGGCTCGCCGGAAAGCGGGCCGAGA
TAGAGCACACGGTCAGCGCCGTACCATGGGCTGCCCGAGGAAACCTGCTTGGCTTTCGCGGCTGTCTTGCGCATTGAGACACGGGCCTCTCCGAAGAGAG
CCGATGGTGCCGCATTCTTCACTGCCTTGCCGGCGAAGGTCGAGGAGGAAATGGACATGGTGGTGGTCGTCATTGAGCTTCTAAGACTGATTTTGTGTTG
TATGTTCTCCTAAGATCTATAATCGTGTGTGTGTGTGGAGATGGCTTAAGATGTGAGGAGGATGGAGTTATTTATGGCACCGGAGATGACACAGGGGAGT
GAGCTTTGCCAT