Detailed information on CNT30138082


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 3e-175

BLAST vs NONCODE:
NONMTRT001605, E-value = 5e-39

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224540Lolium perenneHordeum vulgare67.668.9185.45749forward
CNT30246640Lolium perenneAvena sativa69.8696.7590.05774forward

Expression of CNT30138082

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MDEAGVAKVVESALTEDLGASLKPHSLSKVDTVAGK*

>peptide 2 (52 aa)
MGCPRKPAWLSRLSCALRHGPLRREPMVPHSSLPCRRRSRRKWTWWWSSLSF*

>peptide 3 (44 aa)
ALIKHQKARTSERGIFYMKILVIYIIMVVQIKPNGVFREIHRVS*

>peptide 4 (43 aa)
MACTKKPNMENMARRPFFSSFTLSSAKASGSSARPRGSKLPPG*

>peptide 5 (38 aa)
CAHKTPKGTDFRKRHILHENPGNLHHHGSTDQTKRCVP*

Sequence

>CNT30138082
TGCGCTCATAAAACACCAAAAGGCACGGACTTCAGAAAGAGGCATATTTTACATGAAAATCCTGGTAATTTACATCATCATGGTAGTACAGATCAAACCA
AACGGTGTGTTCCGTGAAATACACCGTGTGTCCTGACACAACTACAACTCGCAGCCGTCAACAACTAATTACTTGCCGGGAACAAAGTTGGTGGCGAAAG
CCCATGCGTTATTGTTGACAGGGTCGGCAAGATGGTCGGCCAGGTTCTCTAGAGGGCCCTTACCGGTGACGATGGCCTGCACAAAGAAGCCGAACATGGA
GAACATGGCGAGACGGCCATTTTTTAGTTCCTTCACCTTGAGCTCCGCGAAAGCCTCGGGGTCATCGGCAAGACCAAGGGGGTCGAAGCTGCCGCCAGGG
TAGAGTGGGTCGACGATCTCACCGAGCGGGCCACCAGCAACACGATACCCCTCGACGGCACCCATGAGCACAACCTGACAAGCCCAAATAGCGAGGATGC
TTTGGGCATGGACGAGGCTGGGGTTGCCAAGGTAGTCGAGTCCGCCCTCACTGAAGATTTGGGAGCCAGCCTTAAACCACACAGCCTCTCCAAAGTTGAC
ACCGTTGCGGGCAAGTAGCTCGGGAAAGACGCAGCCGAGCGCACCGAGCATAGCCCACCTGGAGTGGATCACCTCCAGCTCACGGTTCTTGGCGAACGTC
TCAGGGTCAGCCGAGAGCCCAGCAGTGTCCCACCCGTAGTCACCGGGGAACTCGCCGGTCAAGTAACTTGGGGGCTCGCCGGAAAGCGGGCCGAGATAGA
GCACACGGTCAGCGCCGTACCATGGGCTGCCCGAGGAAACCTGCTTGGCTTTCGCGGCTGTCTTGCGCATTGAGACACGGGCCTCTCCGAAGAGAGCCGA
TGGTGCCGCATTCTTCACTGCCTTGCCGGCGAAGGTCGAGGAGGAAATGGACATGGTGGTGGTCGTCATTGAGCTTCTAAGACTGATTTTGTGTTGTATG
TTCTCCTAAGATCTATAATCGTGTGTGTGTGTGGAGATGGCTTAAGATGTGAGGAGGATGGAGTTATTTATGGCACCGGAGATGACACAGGGGAGTGAGC
TTTGCCAT