CANTATAdb - search

Detailed information on CNT30246640

BLAST search results

BLAST vs Swiss-Prot:
sp|P04784|CB21_WHEAT, E-value = 4e-149

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30138082	Avena sativa	Lolium perenne	96.75	69.86	90.05	774	forward

Expression of CNT30246640

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHREWITSSSRFLANVSGSAESPAVSHP*

>peptide 2 (38 aa)
MPRGRRQGRGGRSCHQGRVGRRSHRAGRRQHGTPPRHP*

>peptide 3 (45 aa)
LKQQRRLAPSAATYLPGTKLVAKAHALLLTGSARWSARFSRGPLP*

>peptide 4 (89 aa)
ETTTAACTVSSYLLARNKVGGESPRVVVDRVGKMVGEVLEGALAMTMACTKKPNMENMARRPFLSSFTLSSANASGSSARPRGSKLPPG*

Sequence

>CNT30246640
CTGAAACAACAACGGCGGCTTGCACCGTCAGCAGCTACTTACTTGCCAGGAACAAAGTTGGTGGCGAAAGCCCACGCGTTGTTGTTGACAGGGTCGGCAA
GATGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCATGACAATGGCCTGCACAAAGAAGCCGAACATGGAGAACATGGCAAGACGGCCGTTCTTGAGTTCC
TTCACCTTGAGCTCCGCAAATGCCTCGGGGTCGTCGGCAAGGCCGAGGGGGTCGAAGCTGCCACCAGGGTAGAGTGGGTCGACGATCTCACCGAGCGGGC
CGCCGGCAACACGGTACCCCTCCACGGCACCCATGAGCACGACCTGACATGCCCAAATGGCGAGAATGCTCTGTGCGTGGACGAGGCTGGGGTTACCGAG
GTAGTCAAGTCCGCCCTCACTGAAGATTTGTGAGCCGGCCTTGAACCATACGGCTTCTCCGAACTTGACGCCGTTGCGGGCAAGTAACTCGGGGAAGACG
CAGCCGAGCGCGCCTAGCATGGCCCACCGAGAGTGGATCACCTCTAGCTCACGGTTCTTGGCGAACGTCTCAGGGTCAGCCGAGAGCCCGGCAGTGTCCC
ACCCGTAGTCACCGGGGAACTCACCGGTCAAGTAGCTCGGAGGCTCACCGGAAAGTGGGCCGAGGTAGAGCACACGGTCAGTGCCGTACCACGGGCTGCC
TGTGGAAACCTGCTTGGCTTTCGCCGTGGTCTTGCGCATCGTGATACGGGCCTCGCCGAAGAGAGCCGATAATGACACATTCTTCACTGCCTTGCCGTCG