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Detailed information on CNT30224540


BLAST search results

BLAST vs Swiss-Prot:
sp|P04784|CB21_WHEAT, E-value = 0.0

BLAST vs NONCODE:
NONBNAT002216, E-value = 3e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30188309Hordeum vulgareSecale cereale63.3999.4291.87689forward
CNT30300930Hordeum vulgareTriticum aestivum74.5280.7691.11810forward
CNT30241434Hordeum vulgareAvena sativa72.6869.9786.46790forward
CNT30665770Hordeum vulgareTriticum dicoccoides78.2989.3990.95851forward
CNT30455809Hordeum vulgareSaccharum spontaneum51.1551.0686.15556forward
CNT30138082Hordeum vulgareLolium perenne68.9167.685.45749forward
CNT30582453Hordeum vulgareEchinochloa crusgalli56.1257.5586.89610forward

Expression of CNT30224540

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MPRGRRQDQAGRSCRLGRAGQQSHQVVLRQCGNPRRRP*

>peptide 2 (43 aa)
MACTKKPNMENMARRPFLISLTLSSANASGSSARPSGSKLPPG*

>peptide 3 (29 aa)
MLLHKILVIYNMIVQIRLHDGTLHREHSL*

>peptide 4 (37 aa)
MVTRASPKRDDDGKFFTALPAKAGEESDMVVAAILIN*

Sequence

>CNT30224540
CGATGTGGAGCGTGAGATGGAAGGCGGGCAAATCTTGTAATGCTTTTGCACAAAATCCTTGTAATTTACAATATGATAGTACAAATTAGACTGCACGACG
GCACACTTCACCGCGAGCATAGTCTCTAGGACAGCTTATTTCCCAGGAACAAAGTTGGTGGCGAATGCCCAAGCATTGTTGTTGACAGGGTCGGAGAGGT
GGTCGGCGAGGTTCTCAAGTGGACCCTTGCCAGTGACAATGGCTTGCACAAAGAAACCAAACATGGAGAACATGGCGAGGCGACCGTTCTTGATCTCCTT
AACCTTGAGCTCAGCAAATGCCTCGGGGTCGTCGGCAAGACCAAGCGGGTCGAAGCTGCCGCCTGGGTAGAGCGGGTCAACAATCTCACCAAGTGGTCCT
CCGGCAATGCGGTAACCCTCGACGGCGCCCATGAGCACGACCTGACACGCCCAGATGGCAAGGATGCTTTGCGCGTGCACGAGGCTTGGGTTGCCAAGGT
AGTCGAGGCCGCCCTCGCTGAAGATCTGGGATCCAGCCTTGAACCAAACAGCCTCACCAAACTTAACACCGTTGCGGGCAAGCAGCTCGGGGAAGACACA
ACCGAGTGCGCCAAGCATAGCCCACCGACAATGAATCACCTCCAGCTCACGGTTCTTGGCGAAGGTCTCAGGGTCAGCTGATAACCCGGCAGTGTCCCAG
CCGTAGTCACCAGGGAACTCCCCGGTGAGGTAGCTCGGGGGCTCGCCAGAAAGCGGACCGAGGTAGAGCACACGGTCAGAGCCGTACCATGGGCTGTCGG
AGGCAACCTGCTTGGCCTTTGCCGCCGTCTTGCGCATGGTGACACGTGCCTCGCCAAAAAGAGACGATGATGGCAAGTTCTTCACTGCCTTGCCAGCAAA
GGCTGGGGAAGAGAGTGACATGGTCGTTGCGGCCATTCTGATCAATTGAGGTTCTGTGTGTTCAAGAGTGAGGAATGTGTGTGGAGATGGCTTGAGAAGA
TTGGAGCAAGAGCCTTCTTAAGGAAGTGGACGCAGAGAGGGAATCGACCGCTGTAGGCTGAGAGGAGAGAGGTGTATAGCCAGAAAT