Detailed information on CNT3013232


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4A7|APR1_ORYSJ, E-value = 5e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520404Zea maysSetaria italica42.228.6695.31192forward
CNT30273403Zea maysChenopodium quinoa25.496.0783.62116forward

Expression of CNT3013232

Peptides detected in this lncRNA

>peptide 1 (40 aa)
KHTQVTSPSATKHRASEAQTSGIHAAIILQLQKLHLIFPP*

>peptide 2 (86 aa)
AHTSNLSLSYQAQGLRSSDFRYTCCNHFAVTKATPDFSPLNPRSFLCHYQTQSPPPPFSTNLDKLIKTNIRSYRLTENDGSRSRCG*

>peptide 3 (70 aa)
MVLDPGAGEGHHGGPLPLADLGAAAWASLSMLPLWRPHSLALASSHHHRPSRSCCPGRTGLVHGSHPMDT*

Sequence

>CNT3013232
AAGCACACACAAGTAACCTCTCCCTCAGCTACCAAGCACAGGGCCTCAGAAGCTCAGACTTCAGGTATACATGCTGCAATCATTTTGCAGTTACAAAAGC
TACACCTGATTTTTCCCCCCTGAACCCTCGTTCCTTCCTGTGTCACTACCAAACCCAGTCCCCTCCACCTCCCTTCTCTACGAACCTAGATAAACTCATA
AAGACCAACATAAGATCATACAGACTGACAGAGAACGATGGTTCTCGATCCCGGTGCGGGTGAGGGACACCACGGCGGGCCGTTGCCGTTGGCGGACCTG
GGGGCCGCCGCCTGGGCGTCCTTGTCGATGTTGCCCTTGTGGAGGCCGCACTCCTTGGCCTTGGCGTCCTCCCACCACCACCGGCCTTCACGCTCGTGCT
GCCCCGGCAGGACGGGCCTGGTGCACGGCTCGCACCCGATGGACACGTAGCCCTG