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Detailed information on CNT30520404


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3013232Setaria italicaZea mays28.6642.295.31192forward

Expression of CNT30520404

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MHQSSASEVFLNPSLCSYRPQFPLSDTSPPSLSTMLDGPTTPIANTTTMDRHRQRTMTLAPWRPLTGGC*

>peptide 2 (71 aa)
MGLAVRLGNRSTVGKLCSCSSACANGFCSPSARNLAQQVLDPGPGQGHHGGPLPLADLGAAACPSFSMLPL*

>peptide 3 (34 aa)
TNSPTSYKYINNLDLLPYTTGPSGLPAIICSDKS*

Sequence

>CNT30520404
CACCAACTCACCCACTAGCTATAAGTACATAAATAACCTCGACCTTTTGCCCTACACCACCGGACCTTCAGGTTTACCTGCAATCATTTGCAGTGACAAA
AGCTAGAGATGCATCAATCATCTGCATCTGAAGTATTTCTGAACCCCTCCCTCTGTTCCTATCGTCCCCAATTCCCTCTCTCTGATACCTCTCCTCCCTC
TCTAAGTACAATGCTAGACGGACCAACGACACCAATCGCCAACACCACCACCATGGACAGACACAGACAGAGAACGATGACTCTCGCTCCCTGGCGGCCT
CTCACCGGAGGCTGTTGACGAAGGCGAGGAGCGAGTCGACGTCCCTCTTCTCGGACGGGTACTTGATGGGCCTGGCGGTGCGGCTCGGGAACAGGAGCAC
GGTGGGGAAGCTCTGCAGCTGCAGCTCCGCCTGCGCGAACGGCTTCTGCTCGCCGTCGGCGCGGAACCTGGCCCAGCAGGTTCTCGATCCCGGTCCGGGT
CAGGGACACCACGGCGGGCCGTTGCCGTTGGCGGACTTGGGCGCCGCCGCCTGCCCGTCCTTTTCGATGTTGCCCTTGTGAAGGCCGCACTCCTTGGCCT
TGGCGTCCTCCCACCACCACCGGCCTTCACGCTCGTGCTGCCCCGGCAGGACCGGCCTGGTGCACGGCTC