CANTATAdb - search

Detailed information on CNT30130910

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FRA7|Y5513_ORYSJ, E-value = 3e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30283952	Lolium perenne	Triticum aestivum	42.16	27.86	87.82	312	forward
CNT30220713	Lolium perenne	Hordeum vulgare	13.65	20.74	86.14	101	forward
CNT3014940	Lolium perenne	Zea mays	11.22	24.78	85.54	83	forward

Expression of CNT30130910

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MGCISGAEVATELPRFAPSSTAELYLAESCAAVGRTALVTDGTRGRRLRAAQASAALRSATGS*

>peptide 2 (34 aa)
MLQHSTSHLHTHAETVVTSTRQPSSQDTTQDTSY*

>peptide 3 (44 aa)
MVNVQMDYSYNLDLEHYKWFMQQTKTQSRCCSTVQVTSIHMQKP*

>peptide 4 (36 aa)
MKLSSLLRRDGLHLRSRGGNRVAALRPIKHGRVVLG*

Sequence

>CNT30130910
CTGGCTCGCCATTAGAGCAATGGAGTCTAAATACATTCAAGGAATTGTTACGAAGAATGAGAAATAACTGAGTTATACAACAGACACAGCAAATGGTGAA
TGTACAGATGGATTATTCATATAATTTGGATTTAGAACATTACAAATGGTTCATGCAACAAACTAAAACTCAAAGCAGATGTTGCAGCACAGTACAAGTC
ACCTCCATACACATGCAGAAACCGTAGTAACATCCACACGACAACCCAGTTCACAAGACACTACACAAGATACTAGCTACTAGGGAGTAACATAATTCAG
GCTTGATGAAATTATCATCATTACTGCGTCGGGATGGGCTGCATCTCAGGAGCCGAGGTGGCAACAGAGTTGCCGCGCTTCGCCCCATCAAGCACGGCAG
AGTTGTACTTGGCTGAGAGCTGTGCAGCGGTGGGGAGGACAGCCCTGGTCACCGATGGAACAAGAGGGAGACGGTTGAGGGCAGCCCAAGCTTCAGCAGC
CTTGCGCTCCGCCACAGGCTCGTAGCGGGTGTAGAGGTCGCGAGCCTTTGGCTCAGCGCGAGCAATGGCAGACTTGGCCAGGCCGGTGGCGGTGCCAACT
AAGCCAGTCTTGTGCACCTCAGCCGCCGCAGAGCGGGCATAGGTCGGCACCTCCTTCACAACCGGGGGGACACGGCGGTCCAGCTCCTGGACAGACTCGT
CGACCTGACAAATTGAACATTCAGCATCAGTGAGACCGTT