« Back to Triticum aestivum search


Detailed information on CNT30283952


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41112|SRP_PHAVU, E-value = 5e-12

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30130910Triticum aestivumLolium perenne27.8642.1687.82312forward

Expression of CNT30283952

Peptides detected in this lncRNA

>peptide 1 (69 aa)
LQLLGNNKTPGSSYCYCVGMGCISGAVAELYLAESCAAVGRTARVTEGTSGRRFRAAQASAALRSATGS*

>peptide 2 (43 aa)
MRCEIRSTELDTPVAKSNSQELDRIINHHIQLRNKVQVSQLFSP

Sequence

>CNT30283952
CCTACAGCTATTAGGTAATAATAAAACTCCGGGTAGCTCTTATTGTTACTGCGTCGGGATGGGCTGCATCTCAGGAGCTGTGGCAGAGTTGTACTTGGCT
GAGAGCTGTGCAGCTGTGGGGAGGACGGCACGGGTCACTGAGGGGACGAGCGGGAGGCGGTTCAGGGCAGCCCAGGCTTCGGCAGCCTTGCGCTCGGCCA
CAGGCTCGTAGCGGGTATACAAGTCGCGGGCCTTTGGCTCAGCGCGAGCAATGGCCGACTTGGCCAGTCCAGTTGCTGTGCCCATTATGCCTGTCTTCTG
CACCTCAGCTGCTGCAGAGCGGGCATAGGTTGGCACCTCCTTCACGACCGGTGGGACACGACGATCAAGCTCCTGGACAGACTCATCAACCTGCAAGGCA
CAAGCACATGCAGACATTAGTTACTTGAATAGCAATCAAATGATTAAAATACGATGCACGTGGAAGTGTAGAAATGAAGAAACAGTTAGTTAACACTGCA
TAAGCCTTGCCTCGCGCTAACCAATAAATCAGTTGCAAGAACTAGCAACATCTGAATTCAAATGCCCATGTTATAATGATATTTGCTTTACAGGCTATTG
TGTTGATAAATTGGACATAAATTGATTGATGCAAGAGTTGTAGCCAATCCCATTTCGAATTGCCCAGATAGATGCAAGCAAAATATGATATCCTCAGTTA
ACATCAACTCAATTTTGCCCTGTACCAACTAAGATCCTACAATCCAACTCTACAGATAGAAAATGAAGCAGACAGCTGCCAACAACAAATTATAACTAGT
GCCTAATAAGTCAGTTCCTCTGGTGTTCAGACAAGGTATGTGATCAACAGATTGGCAAGAACACCTTGATTCTCCTAGGTAGTATCAAACTATCAGGACA
TCATCAGTATTACTAAGAAAAAACTAGATTCACAGGATAAACAATCCAGCAGTTTAATTGACATAACGGCTCATAACACTACGCAGATGCGATGTGAAAT
CAGGAGCACAGAACTAGATACTCCCGTCGCAAAAAGCAACAGCCAGGAACTGGATCGGATAATAAATCATCACATACAGCTAAGAAATAAAGTTCAAGTT
TCTCAATTGTTCTCACCTTG