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Detailed information on CNT30116707


BLAST search results

BLAST vs Swiss-Prot:
sp|P51431|R27AB_ORYSJ, E-value = 1e-90

BLAST vs NONCODE:
NONSTUT000620, E-value = 7e-22

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3067544Oryza nivaraLeersia perrieri30.1414.1698.28233forward
CNT30369422Oryza nivaraOryza glumipatula30.1417.8195.28233forward

Expression of CNT30116707

Peptides detected in this lncRNA

>peptide 1 (34 aa)
LKNTSEQRNWRKLIIQQESENTSELTSHHQFSNR*

>peptide 2 (64 aa)
MRRCWSGGIPSLSWILAFTLSMVSEDSTSSVMVFPVRVFTKICILAAAGEGSPPRLRRREGWGEG

Sequence

>CNT30116707
TCTCAAAAACACATCAGAGCAACGAAACTGGCGCAAACTAATCATCCAACAGGAATCAGAAAACACAAGTGAACTCACATCGCATCATCAATTCAGTAAC
AGATAATAATATTCCAAGAGGCTACTACTCAAAGTTTTCCAATTGTAAACGGAGAACAAAACGCATATAATCTGAATAACATATAAAAGGGAATGAAAAG
CATCAGATCAGAGCAAAGCGAGCAGCAGCAAGCATCAACCTAGGCCTTCTGGTTGTAGACGTAGGTGAGGCCGCACTTGCCGCAGTAGTGGCGATCGAAG
TGGTTGGCCATGAAGGTGCCCGCGCCGCAGTCGTTGTTGGGGCACTCCTTCCTGAGCCTGGTGACCTTGCCGGTGGCGTCGTCCACCTTGTAGAACTGGA
GCACGGCGAGCTTCACCTTCTTGTGCTTGTGCTTGATCTTCTTGGGCTTGGTGTACGTCTTCTTCTTGCGCTTCTTGGCGCCGCCGCGGAGGCGGAGCAC
GAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGG
ATCCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGA
TCTGCATCTTGGCGGCGGCGGGGGAGGGGTCGCCTCCGCGGCTGCGGCGGCGAGAGGGGTGGGGGGAAGGTGG