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Detailed information on CNT30369422


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ARZ9|R27AA_ORYSJ, E-value = 7e-80

BLAST vs NONCODE:
NONORUT000213, E-value = 4e-163

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674820Oryza glumipatulaSetaria viridis13.0732.2697.08171forward
CNT30523172Oryza glumipatulaSetaria italica13.0727.0197.08171forward
CNT30316655Oryza glumipatulaCorylus avellana17.2871.7592.04226forward
CNT30545885Oryza glumipatulaIpomoea triloba17.355092.07227forward
CNT30628786Oryza glumipatulaVigna unguiculata17.4346.5391.23228forward
CNT30178120Oryza glumipatulaSecale cereale17.8126.0694.42233forward
CNT30283510Oryza glumipatulaTriticum aestivum18.0432.8295.76236forward
CNT30220676Oryza glumipatulaHordeum vulgare18.0441.9294.92236forward
CNT30586129Oryza glumipatulaMusa acuminata17.2842.4890.27226forward
CNT30435195Oryza glumipatulaAegilops tauschii18.0440.7694.92236forward
CNT30241998Oryza glumipatulaAvena sativa18.0429.894.07236forward
CNT30655772Oryza glumipatulaTriticum dicoccoides18.0428.9295.76236forward
CNT30456592Oryza glumipatulaSaccharum spontaneum17.5127.8696.07229forward
CNT30130551Oryza glumipatulaLolium perenne18.0434.6594.92236forward
CNT30720110Oryza glumipatulaTriticum spelta18.0437.3495.34236forward
CNT30341903Oryza glumipatulaEragrostis tef18.0427.9695.76236forward
CNT30368046Oryza glumipatulaSorghum bicolor18.0438.6995.34236forward
CNT30582668Oryza glumipatulaEchinochloa crusgalli17.4339.3196.49228forward
CNT30499448Oryza glumipatulaDigitaria exilis17.6630.695.24231forward
CNT30116707Oryza glumipatulaOryza nivara18.0430.5395.34236forward
CNT30594254Oryza glumipatulaEragrostis curvula18.0428.4796.61236forward

Expression of CNT30369422

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MPGYGFQDNTLINIDQDHGQKDHLIILTH*

>peptide 2 (34 aa)
EPLFASTCLATIVHGSMNKRQITPYCYARIWLSG*

>peptide 3 (37 aa)
GTFICIYLPRYNSTWKHEQKADYTILLCQDMAFRITH*

>peptide 4 (69 aa)
MIPKPKVGHHNLHRCDARVFSSKETSLIRHGKKKRINYHLINRSISSSFLPSAPQEQEPTPTPAGCRRR*

>peptide 5 (79 aa)
MSRCWSGGIPSLSWIFAFTLSMVSEDSTSSVIVFPVRVFTKICILAGGRSGGALALTCGFSRGGGVEATAVGVGCGRLGF

Sequence

>CNT30369422
GGAACCTTTATTTGCATCTACTTGCCTCGCTACAATAGTACATGGAAGCATGAACAAAAGGCAGATTACACCATATTGTTATGCCAGGATATGGCTTTCA
GGATAACACATTGATTAACATTGACCAGGATCATGGACAGAAAGATCATCTAATCATTTTAACGCACTGAATAACAAAACTGGCAAAGACAGGAATCACA
TTCTGTGAGATATAACAGGTCACGTCCTGAATCCAACTAGAATTAAATTTTTAATACGAATCAACTTTACAGGGCCAAATCCTAAATCAAATTCGAATTA
AATTCTTAATATACGAGCAGATCATCACAAACATCTACTCCATCCAGAACTTACGCATTACCGCAAACTACAATTAGATAATAAAACTAACATCTATGCA
TAGCGGAATTTCAATCAAAATTCCCAATCACAATTACTTCGCTTCCCTGAAACAAGCAATTTAATCAAATACCATAACCGATATAACCAAGACCACGCCA
ACGGATAAAAAGATGATTAACCCAAACATAATTCGACAGTAGTACATAACATGATTCCAAAACCAAAAGTAGGACACCACAATCTTCACAGATGTGATGC
TAGGGTGTTCAGTTCCAAGGAGACTAGTTTAATACGACATGGCAAAAAGAAAAGGATTAATTATCATCTAATAAACCGTTCGATTTCCTCCTCCTTCCTT
CCTTCCGCCCCCCAAGAACAGGAGCCTACGCCTACGCCTGCTGGTTGTAGACGTAGGTGAGGCCGCACTTACCGCAGTAGTGGCGGTCGAAGTGGTTGGC
CATGAAGGTGCCGGCGCCGCACTCGGCGTTGGGGCACTCCTTGCGGAGGCGGGTGACCTTGCCGGTGGCGTCGTCCACCTTGTAGAACTGGAGCACGGCG
AGCTTCACCTTCTTGTGCTTGTGCTTCTGCTTCTTGGGCTTGGTGTACGTCTTCTTCTTGCGCTTCTTGGCGCCGCCGCGGAGGCGGAGCACCAGGTGGA
GGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATCCCCTC
CTTGTCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATC
TTGGCCGGCGGCCGCAGCGGCGGCGCGCTTGCCCTTACCTGTGGTTTCTCCCGCGGCGGCGGGGTGGAGGCGACGGCGGTGGGGGTGGGGTGTGGACGGC
TAGGGTTT