Detailed information on CNT30108554


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691216Oryza longistaminataOryza sativa21.9610.5885.76330forward
CNT30103647Oryza longistaminataOryza rufipogon53.6395.2798.14806forward
CNT30577847Oryza longistaminataOryza barthii42.3898.1597.8637forward
CNT30551657Oryza longistaminataOryza brachyantha16.4345.3292.31247forward

Expression of CNT30108554

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MFGHMHKVLNVKKNQLHSLRVNCETNLLSLIVS*

>peptide 2 (64 aa)
MAISVPPVKAAAPMIPPRFQFSHLLLGDSLPSDCSSSLAAAIAEQATIISIASYNAKTFDYKNI*

>peptide 3 (98 aa)
MPAKPCESRLHERSFSWKKMMTPHPQSVIVILKYESDLPCSKSDTENPIICGVNIHKSSSNHLRKCIAIHTSEKMTWSKVIYPRRWPSAFLPSRRLRR*

>peptide 4 (67 aa)
MSSPDRRRPEPSSPPSDSSRLDDTAPISSPPTSSITVVTLTSACRTLVCWDRRQDSRCSAQAGPGFD*

>peptide 5 (36 aa)
RSSARSCKMGFRRRRPCRHGGRKSPRRPSYSTSKYP*

>peptide 6 (34 aa)
MYNNAVLNVHRHVYTDNLVIMYTDNETTTHYGLV*

>peptide 7 (52 aa)
LAPQLEAVKWGFAAGDHVATAAGNRPAALATPRVNTHELSRPAPARAILSSV*

>peptide 8 (34 aa)
MTKLVERSLFLACAFACTTRLYFYPNFTCTTMLC*

>peptide 9 (29 aa)
MCVRISDVTTKPKFFLQLNKPYCHKTFDV*

>peptide 10 (31 aa)
MRLLHTMALFSSQNKKLFTHHIECLDTCIKY*

Sequence

>CNT30108554
CTCGCTCCTCAGCTAGAAGCTGTAAAATGGGGTTTCGCCGCCGGCGACCATGTCGCCACGGCGGCCGGAAATCGCCCCGCCGCCCTAGCTACTCCACGAG
TAAATACCCATGAGCTCTCCAGACCGGCGCCGGCCAGAGCCATCCTCTCCTCCGTCTGATTCGTCCCGACTCGACGACACCGCTCCAATTTCCTCACCGC
CGACGAGCTCAATTACAGTGGTTACTTTGACTTCGGCGTGCCGCACTTTGGTGTGCTGGGATAGAAGACAGGATAGTAGGTGTTCAGCTCAAGCTGGTCC
AGGATTTGATTGACAAGTGTCAAGTAGGAGGAATGTCCGACGATGAGCTCACTGGCATCAACCTGTACATGAACTGCTTGGATGCCGGCCAAGCCTTGTG
AAAGCAGGCTACATGAGAGATCATTTTCATGGAAAAAAATGATGACTCCACATCCACAATCTGTGATAGTGATTCTGAAATATGAGTCAGATTTACCTTG
CTCGAAAAGTGATACCGAGAATCCAATCATTTGTGGAGTAAACATTCACAAATCGTCCAGCAACCATCTGCGGAAATGCATCGCCATCCATACTAGTGAG
AAAATGACTTGGAGCAAGGTCATATACCCCCGGAGATGGCCATCAGCGTTCCTCCCGTCAAGGCGGCTGCGCCGATGATTCCTCCACGCTTCCAGTTCTC
CCATCTGCTTCTTGGTGACTCGCTTCCTTCTGACTGTTCTTCCTCTCTCGCTGCAGCCATAGCAGAGCAAGCAACCATTATCTCGATAGCTTCCTACAAT
GCCAAAACGTTCGATTACAAAAACATATAGTTTGTGTCCATGACAAAACTGGTAGAGAGATCACTGTTCTTAGCGTGTGCATTTGCATGTACAACTAGGC
TTTATTTCTATCCTAATTTCACATGTACAACAATGCTGTGCTGAATGTACACCGTCATGTGTACACAGATAATCTAGTGATCATGTACACAGATAATGAG
ACTACTACACACTATGGCCTTGTTTAGTTCCCAAAACAAAAAACTTTTCACCCATCACATCGAATGTTTGGACACATGCATAAAGTATTAAATGTGAAAA
AAAACCAATTACACAGTTTACGTGTAAATTGCGAGACGAATCTTTTAAGCCTAATTGTGTCATGATTTGACAATGTGGTGGTACAGTAAACATTTGCTAA
TGACAGATTAATTAGGCTTTGTCTCGCAGTTTCCTGGCGGAACTTTTTGTTATTAGACTACGTTTAATACTTCAAATGTGTGTCCGTATATCCGATGTGA
CAACCAAACCCAAATTTTTTCTCCAACTAAACAAGCCCTACTGTCATAAAACATTTGATGTTTAGGACAAGTTAGTCAAACTTATTTTGAAACATTTGAC
CATGAATAATTCCTCAAATTCCTAGTTAAAAACTGGTGAACGCAAATTTTCCTTGAATAATAATATCGTAACATTTAACTTATTGTATTTTATAAACTCA
TCC