Detailed information on CNT30107866


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001330, E-value = 3e-31

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641010Oryza longistaminataNymphaea colorata4.725.488.8963reverse complement
CNT30370153Oryza longistaminataOryza glumipatula46.3483.8197.58621forward
CNT30551599Oryza longistaminataOryza brachyantha8.5839.2594.78115reverse complement

Expression of CNT30107866

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MDWPAGVNDQICSSNDQWCIANVQEGQASE*

>peptide 2 (31 aa)
MWLHNTNPEPISHTPCYCWMSTCSGDGEPSS*

>peptide 3 (33 aa)
MLRRKKIKAADGLQLLQKDVCMYQFYKCQLKPP*

>peptide 4 (59 aa)
MVPLLGGAMCACTWHFFYNSESLEVLVALQGALTVIGNITMCIAAFRIFKASQESPKSS*

>peptide 5 (75 aa)
MVNQVHESWTGQPVSMTKFAAAMTNGALPMCRKVKHRNETSTLPRYGSHEWTQGARRVAHQDPPGRHRTEQLASSK

>peptide 6 (44 aa)
MIEMDDLPCDRLIIRIIKLYCFHPLQYTGILLVNQTYRLLFNIA*

>peptide 7 (51 aa)
MVHCQCAGRSSIGMKPPLCLDMDRMSGLRERDVSRIRTLLDGIGRSSSLAPR

Sequence

>CNT30107866
GAACATAATAAAATGCAAGGTAAAATTATTAAATGAAAAATATTATTAATAAACAATGATGTTGATGTATTTCTAAATATTTTCACGTATTATTTATTAA
GTGTCAATGATTGAAATGGATGATTTACCATGTGACCGATTAATTATTAGAATTATAAAATTATATTGTTTTCATCCGTTGCAATACACGGGCATTTTGC
TAGTAAACCAAACATATAGACTATTGTTTAACATTGCATAAATATTGACTTAGGCCGAGTTTAGTTCCAAATTTTTTCTTCAAACTTTTAACTTTTCTAT
CACATCAAAACTTTCCTGCACACATAACTTTCCAACTTTTCCATCACATCGTTCTAATTTTAACCAATTTTTTAATTTTAGCGTGAACTAAACACACCCT
TAGCAAAGTTGAGCTACAAACCAAACCAACCCTCGTTTGCCCAATTGGATTTCAGCACNNNNNNNNNNAGAGGACGGGGCTCAAGGGTTGGAAAGGCCTC
TCTTGGGGAATGGTTCCACTTCTTGGTGGAGCGATGTGCGCTTGCACGTGGCATTTCTTCTATAATTCGGAGTCTCTTGAAGTGCTTGTAGCGCTCCAAG
GTGCTCTAACAGTGATTGGTAACATTACAATGTGCATAGCTGCATTTCGCATCTTCAAAGCCTCCCAGGAAAGCCCAAAAAGTTCATAAAGTTACACCTG
ACATGAAATGGCAAACGGCAGATGCTGCGAAGGAAGAAGATAAAAGCTGCTGATGGCTTGCAGCTACTTCAGAAAGATGTTTGTATGTATCAATTCTACA
AATGCCAGCTAAAGCCACCCTGAAATTTGTGTATTGACTTGGTTTTTTTCTAGACAATGAGTGTATTTACTCAGATAAGAAGAAAATTTACCTCACCTGC
TATAGCCTATGCCTCATCTCATCTTCAACTGTTTTGAACAATTGTTGTGCAAGCTTCTTCTGCTCATGATCATTTAACCAAACCTGCTCCAAAAGGTGCC
AAAGCACCTGTCCTTCACCTCGAGATGCTCTTGGCATGTGGCTTCATAATACTAACCCTGAACCAATATCACACACTCCCTGCTATTGCTGGATGAGCAC
TTGCAGTGGTGATGGTGAACCAAGTTCATGAATCATGGACTGGCCAGCCGGTGTCAATGACCAAATTTGCAGCAGCAATGACCAATGGTGCATTGCCAAT
GTGCAGGAAGGTCAAGCATCGGAATGAAACCTCCACTCTGCCTAGATATGGATCGCATGAGTGGACTCAGGGAGCGAGACGTGTCGCGCATCAGGACCCT
CCTGGACGGCATCGGACGGAGCAGCTCGCTAGCTCCAAGG