Detailed information on CNT30103167


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30195835Oryza rufipogonPisum sativum24.8384.6581.4215forward
CNT3087851Oryza rufipogonVigna radiata38.3436.3280.72332forward

Expression of CNT30103167

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MMEKWDCSWVKQDYMMEKLGCILALDCKPEKMDCNHPLTMECSLVKVLVRKPFLQHMARTEHL*

>peptide 2 (35 aa)
MVSQRWASVLVSCRSPGLQHSLGVEVRWPAAASDH*

>peptide 3 (88 aa)
MQEMSDCMRVMSDCMRGKWGCKTETLDCMMVMWGCKMVMWGYKMVMWGCMQEKLDYMQEKSDYKLVMSDCSSEKWDYNLARSGCNLEM*

>peptide 4 (63 aa)
MIWCPRDGRACWCHAEVQAFNIAWELKFDGLLQHLIIEIQCTASCTDRSKLAKHNVLSDTSQVV

Sequence

>CNT30103167
GCTGTAGCTTGGAGATGTCGGGCTGTAACCAGGTGATGTAGGGCTGTATGCAGGAGATGTCGGACTGTATGAGGGTGATGTCGGACTGTATGAGGGGGAA
GTGGGGCTGTAAGACGGAGACGTTGGACTGTATGATGGTGATGTGGGGCTGTAAGATGGTGATGTGGGGCTATAAGATGGTGATGTGGGGCTGTATGCAG
GAGAAGTTGGACTATATGCAGGAGAAGTCGGACTATAAACTGGTGATGTCGGACTGTAGCTCGGAGAAGTGGGACTATAACTTGGCGAGGTCGGGCTGTA
ACTTGGAGATGTAGGGCTATAGCTAGGTGATGTAGGGCTGTAGCTTGGAGATGTTGGTGAGTATGATGGACTGGTAGGTGAGTATGATGGACTTGTAGGG
GAGTAAGTAGGAGAGCCAGGTGTATATGATGGAGAAGTGGGACTGTAGCTGGGTGAAGCAGGACTATATGATGGAGAAGTTGGGCTGTATCCTGGCCCTG
GACTGTAAACCGGAGAAGATGGACTGTAACCACCCCCTGACGATGGAGTGTAGCCTGGTGAAGGTACTGGTGAGAAAGCCATTCCTCCAACATATGGCGA
GAACTGAGCATCTGTAATGGGGGAAGCCCTGATGTTTGGACTTAGCAGGTAGCTCGGTGACATCATTCCTTCATGATATGGTGTCCCAGAGATGGGCGAG
CGTGCTGGTGTCATGCCGAAGTCCAGGCCTTCAACATAGCTTGGGAGTTGAAGTTCGATGGCCTGCTGCAGCATCTGATCATTGAGATACAATGCACAGC
CTCCTGTACCGATAGGAGCAAGCTGGCCAAGCATAATGTTCTCAGTGACACCTCTCAGGTAGTCAG