Detailed information on CNT30101016


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691986Oryza rufipogonOryza sativa58.1389.33100268forward
CNT30369960Oryza rufipogonOryza glumipatula71.1552.7399.7328forward
CNT30575765Oryza rufipogonOryza barthii100.8759.5499.14465forward

Expression of CNT30101016

Peptides detected in this lncRNA

>peptide 1 (34 aa)
WLRCRSYNNDTSLIRSSLGCGLRLTLNLDPKKQR*

>peptide 2 (48 aa)
MVRWLAPSRSCRCAHLPGTKLVAYAQHRPPRVDHLQLPVPRERLRVGR*

>peptide 3 (74 aa)
MHCCNCNCRVGAWLLQVYTWYVGWHHLDRVVVLTCRGRSWWRMPSIAHREWITSSSLFLANVSGSADSPAVSHP*

Sequence

>CNT30101016
CTGGCTTCGTTGTAGATCCTATAATAACGATACATCATTAATTCGATCATCCCTTGGATGCGGCCTGCGGCTTACATTAAATCTCGATCCAAAGAAGCAA
AGATGATGACAGACAGAAATTAATTAAGCTAGAAATCTCCTCGATCGATCACACACACACACACAATTAAGGTACATACATACATGCACTGCTGCAACTG
CAACTGCAGGGTCGGTGCGTGGCTACTACAAGTGTACACATGGTACGTTGGTTGGCACCATCTCGATCGTGTCGTTGTGCTCACTTGCCGGGGACGAAGT
TGGTGGCGTATGCCCAGCATCGCCCACCGCGAGTGGATCACCTCCAGCTCCCTGTTCCTCGCGAACGTCTCCGGGTCGGCCGATAGCCCCGCCGTGTCCC
ACCCGTAGTCTCCCGGGAACTCTCCGGTCAGGTACGATGGCGTCTGCTCCGAGAACGGGCC