Detailed information on CNT30691986


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30711471Oryza sativaGlycine max5211.5286.54156forward
CNT30556099Oryza sativaOryza glaberrima59.3318.26100178forward
CNT30369960Oryza sativaOryza glumipatula80.6738.91100242forward
CNT30101016Oryza sativaOryza rufipogon89.3358.13100268forward
CNT30575765Oryza sativaOryza barthii90.6734.83100272forward
CNT30116841Oryza sativaOryza nivara60.3324.5699.45181forward

Expression of CNT30691986

Peptides detected in this lncRNA

>peptide 1 (70 aa)
NCNCRVGAWLLQVYTWYVGWHHLDRVVVLTCRGRSWWRMPSIAHREWITSSSLFLANVSGSADSPAVSHP*

>peptide 2 (63 aa)
QLQLQGRCVATTSVHMVRWLAPSRSCRCAHLPGTKLVAYAQHRPPRVDHLQLPVPRERLRVGR*

>peptide 3 (99 aa)
ATATAGSVRGYYKCTHGTLVGTISIVSLCSLAGDEVGGVCPASPTASGSPPAPCSSRTSPGRPIAPPCPTRSLPGTLRSGTMASAPRTGPGTWDGQVHTC

Sequence

>CNT30691986
GCAACTGCAACTGCAGGGTCGGTGCGTGGCTACTACAAGTGTACACATGGTACGTTGGTTGGCACCATCTCGATCGTGTCGTTGTGCTCACTTGCCGGGG
ACGAAGTTGGTGGCGTATGCCCAGCATCGCCCACCGCGAGTGGATCACCTCCAGCTCCCTGTTCCTCGCGAACGTCTCCGGGTCGGCCGATAGCCCCGCC
GTGTCCCACCCGTAGTCTCCCGGGAACTCTCCGGTCAGGTACGATGGCGTCTGCTCCGAGAACGGGCCCAGGTACTTGGGACGGTCAGGTCCATACCTGC