« Back to Solanum tuberosum search


Detailed information on CNT3097183


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 6e-153

BLAST vs NONCODE:
NONMEST001181, E-value = 8e-149

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30356895Solanum tuberosumLactuca sativa82.1990.6583.78863forward

Expression of CNT3097183

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSKVMVFPVKVFTKICIPPLSLNTR*

>peptide 2 (30 aa)
MPSLSWILALTLSMVSELSTSRVMVFPVKVF

>peptide 3 (29 aa)
MSFHLPIACQQKSTFADLVGYPLCPESLP*

>peptide 4 (34 aa)
MVSELSTSRGNSLASQGLHKDLHPTAKTKDQVKG*

>peptide 5 (44 aa)
MPSLSWILALTLSIVSELSTSRVMVFPVKVFTKICIPPRRRSTK*

Sequence

>CNT3097183
TATTATTCACTAAAAGAGAAACATGAAAGTTTATGATCTGTTGGGAAACATCACAGGATCACAAAAGGAAACAAACTAGTTCATGAACAAAACACTGCTG
CAAACTGACCAAAGACACAGGCACTACCATTGACAACAGACCCCTCTAAAAACCACCACGGAGACGGAGGACAAGGTGCAGAGTAGACTCCTTTTGGATG
TTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGAATCTTAGCCT
TCACATTGTCAATGGTATCAGAACTCTCCACCTCCAAAGTGATGGTTTTCCCAGTCAAGGTCTTCACAAAAATCTGCATACCTCCCCTGAGCCTCAACAC
AAGATGAAGGGTCGATTCCTTCTGAATATTGTAATCGGCTAATGTCCTTCCATCTTCCAATTGCTTGCCAGCAAAAATCAACCTTTGCTGATCTGGTGGG
ATACCCTCTTTGTCCTGAATCTTTGCCTTAACGTTGTCAATGGTGTCGGAGCTTTCCACCTCAAGGGGTAATAGTCTTGCCAGTCAAGGTCTTCACAAAG
ATTTGCATCCCACCGCGAAGACGAAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTCCGGCCATCCTCAAGCTGCTTTCCGG
CAAAGATCAATCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGAT
GGTCTTTCCGGTCAAAGTCTTCACGAAAATTTGCATTCCACCACGAAGACGGAGCACCAAGTGAAGGGTTGATTCCTTCTGGATGTTGTAATCAGCAAGG
GTCCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATCGGCCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTAACATTGTCAATGG
TGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCTGTCAAAGTCTTC