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Detailed information on CNT3093201


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3054198Solanum tuberosumAmborella trichopoda20.115.8592.24116forward

Expression of CNT3093201

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MYSKVNLLVDQFKVASGRPLRGVYMLKLKGSSSNSKRLVKSRGINRLII

>peptide 2 (51 aa)
VLLDAEDQQSKNHELTNWLKELKDVLYDADDFLDEIQTHVQQSQRLKPKVR*

>peptide 3 (87 aa)
MSPHRVIFRILITNGIQMISKLIRRSFQLARIRYLNETRSCGITHVSSEITAQKDHDLLKSEDHLMLCLFHSKSNFFFFCLSSMYVF*

Sequence

>CNT3093201
GTACTGTTGGATGCTGAGGATCAACAATCCAAGAATCATGAGTTGACCAATTGGCTTAAAGAACTCAAAGATGTTCTTTATGATGCTGATGATTTTCTTG
ATGAAATTCAGACTCATGTACAACAGAGTCAAAGGTTGAAACCAAAGGTGAGATGAATGTGTCCAATCTATGATGGATGTCCCCACATCGTGTGATATTC
CGAATCCTCATTACTAATGGAATCCAAATGATCTCTAAATTGATCAGAAGATCCTTTCAGTTGGCTAGAATCCGTTACTTGAACGAAACTAGATCTTGTG
GAATCACACATGTAAGTTCAGAGATCACAGCTCAGAAGGACCATGACCTACTGAAGAGTGAAGATCACCTCATGTTATGTCTTTTTCATAGTAAAAGCAA
CTTCTTCTTTTTTTGTTTAAGCAGCATGTATGTATTCTAAAGTAAACTTACTGGTCGACCAATTCAAAGTCGCGTCTGGTAGGCCATTAAGAGGGGTATA
TATGTTAAAGCTGAAAGGTTCTAGCTCAAACTCGAAACGTCTAGTTAAGAGCAGAGGAATTAACCGTCTCATCATAT