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Detailed information on CNT3054198


BLAST search results

BLAST vs Swiss-Prot:
sp|P61241|YCF2_AMBTC, E-value = 2e-137

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3093201Amborella trichopodaSolanum tuberosum15.8520.192.24116forward
CNT30153751Amborella trichopodaPrunus persica49.323.3384.49361forward
CNT3023454Amborella trichopodaPopulus trichocarpa9.726.4987.3271reverse complement

Expression of CNT3054198

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MISKLIRRSFQLARIRYFNQNRSCVIVLNIC*

Sequence

>CNT3054198
GATTCTATCTCTGTTTGTTCCGTTTGAAGAAATGAAGGATCCCAAAGAATCGATCTTTCTTTAAGTTGCTCAATTTCTGTCTGATGTATCAATGTGTGAT
ATTCTGAATCCTCATTACTAATGGAATTGAAATGATCTCTAAATTGATCAGAAGATCCTTTCAATTGGCTAGAATTCGTTACTTTAACCAAAATAGATCT
TGTGTAATCGTATTGAATATTTGTTGATATATTATGTACCTTGCTAAAAAACATATCCTTATTTACCAACCACATACTGCCTAACCAAATCAAATTCTCT
CTCAATACGTTCCTCAAAAAATCCAATTCGTGCTGATTATTCCCCCAACTAACGAAGAGATCCTAGTGGAATTGCCACATATGAAATTGAGAGCAAGTTT
GCAAAGAAATACCCCACTTGTTTTTGTTTCTCGAGAAGAGACGGGGAATATGCTCAATATCATTTGATTGAATAATTGCCTCAGCTCCTTGTTGTTTGAA
GAAACCTCCACTTCAATTAGTCATTTTTCACGAAAAAGCAGACATGAGATAACAAATCAAGTGTTTCACTAAGATTTCAAATAGCTGTCTCGAATTCAAG
TTGATTATGTTTTGCTTCTTTCCCTGAGAAAGGCGATCAAACAATTCCAAATCATGGTCCTTGCCGATCGGATCATTCGTATCCGTATAGGATAAAAAAA
GAAACTCCAAATATTTGTTATCTTTCTCTTTG