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Detailed information on CNT3081605


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR0|TBB3_ARATH, E-value = 5e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30542792Brassica junceaBrassica napus11.5436.6481.76159reverse complement

Expression of CNT3081605

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MSYHCLIVSFFCKSRKEHVTFWLSVLPALHWCVLVYVYAYFLVECTLCSFICGFLNV*

>peptide 2 (50 aa)
MFNLPLTLVSLIHLTPFQCFDSLKVDFVPLTSRESQQYCSLKDLELIQQL*

>peptide 3 (31 aa)
MIFLVLLELAFVYFFLFNTTTLQSFQAKKSG*

>peptide 4 (42 aa)
MILEALNETAVEMEGGFPVDGERRGRVSAMLKYRQDSFVRRR*

Sequence

>CNT3081605
TCACAGTAAAGGAAAGTAGAAGGTTCTTCCTTTTTTCAATTTAACTTCTGTCTTTCTCCTCGGTAGAGAGGTGGTGGCTGCGACTCAGGAATTATGGCGA
GGCTTCGAAGGCGAGTGTTGACTACGACATGACGGCGAGAAGGAAACGAGCTGGCAAGGAAGTAGCAGAAGTTAGCTTTTTGGTTTAGTAGTCGGTCTGT
GGGTTTAGGCGGCGATTTTAGGGTTCTTTCCAATTAGGCGTCGTGGAATTTCTTGCTGATTCGTGGTTTTTTGTATGTGGTGGGTTCATGTTTTGTAAAA
CCTTTCAGTTTGCCCGTGAGAAGGTGTCTTAAATGATCTTTCTTGTTTTACTTGAGTTAGCTTTTGTCTATTTTTTTTTGTTTAATACCACAACGCTGCA
AAGTTTTCAGGCCAAGAAGTCAGGTTAGAATCTTCTCCTTATAACTTGTCGGTAATTTCATGATATTTTCTTTGTAAATTTTTTTTTTTAGAGTTGCATA
CCATGTGTTCGCTAAAATTCCCAACTGAACTCAAAAGACAAACACAATGTCATACCATTGCTTGATAGTTTCTTTTTTTTGTAAGAGTAGAAAAGAACAT
GTTACTTTCTGGTTAAGTGTACTCCCCGCTCTTCATTGGTGCGTTCTTGTGTATGTGTATGCCTACTTTCTGGTTGAGTGCACACTCTGTTCTTTTATAT
GTGGTTTCTTGAACGTTTGATATCTGCCACAATGTATGATGTCACAGGCTGACTGAGATTACATGTTCAACTTACCTCTGACCTTAGTAAGCTTGATACA
TCTGACCCCATTCCAATGTTTTGACTCCTTGAAGGTGGATTTTGTTCCTCTCACCTCTAGAGAATCTCAGCAGTATTGTTCCCTCAAAGACCTTGAACTC
ATTCAGCAATTGTGAGACTCCAAAAACATGATGTGTGCTGCTGACCCAAGACACAGTTTTTACGTCGCAGCTATGTTCCAAGACAAGTGCTGAACCAAGA
GACATGGGAAGGATTCATGATTCTTGAAGCTCTCAATGAGACTGCCGTGGAGATGGAGGGTGGGTTTCCCGTTGACGGAGAGAGAAGAGGAAGAGTTTCA
GCGATGTTGAAATATAGACAAGATTCATTTGTGCGGAGAAGGTAAAAGAAGGATTTTGCAGGCGAGAGAGGAGAGGGCGAAGGATGGAGGTTTAAACAAA
GTGACTAAAGAAGTTTTGTAGTGAAAGTGAGAGGTTGATTTAAGGAGATCGAAGAAGAACAAGCAAAACCATTAAAGTTGGAGGTAGAAGATAAGGTCTA
ATTAATAAACATTGAAAAAAAGAAAAAGAAAAAGAAATGTGCTGTGATAAAATCCCAAATAACTTGTTAGGATCGAAC