Detailed information on CNT3081494


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FH97|EPS1_ARATH, E-value = 4e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377557Brassica junceaArabidopsis thaliana53.4320.6283.96187forward

Expression of CNT3081494

Peptides detected in this lncRNA

>peptide 1 (36 aa)
PISPHSLSRFQTFATAPFRLSSQPPTLSRGPSAHQP*

>peptide 2 (43 aa)
THFSAFAFSFSNVCDRSISFIFTAAHPIPWSISSPTVTLAIPV*

>peptide 3 (93 aa)
HPFLRIRFLVFKRLRPLHFVYLHSRPPYPVVHQLTNRDSCYPGLTHVPKTLFLQRWTQPSPHVYRIWDTDWVINLVKEPTFELKTTLARSFGA*

Sequence

>CNT3081494
CACCCATTTCTCCGCATTCGCTTTCTCGTTTTCAAACGTTTGCGACCGCTCCATTTCGTTTATCTTCACAGCCGCCCACCCTATCCCGTGGTCCATCAGC
TCACCAACCGTGACTCTTGCTATCCCGGTCTGACTCACGTTCCCAAAACACTCTTCCTCCAACGGTGGACTCAACCTTCTCCTCATGTTTATAGGATCTG
GGATACGGATTGGGTAATCAATCTCGTCAAAGAACCAACCTTTGAGCTGAAGACGACGCTGGCAAGAAGCTTCGGAGCCTAAACCCTTTGAGCAGATCTC
AGACCAGCAGTTCAAGAACTTCCAGATCGATTCTCCATCAGCTACAGTGG