« Back to Brassica juncea search


Detailed information on CNT3080234


BLAST search results

BLAST vs Swiss-Prot:
sp|P13851|CB21_SINAL, E-value = 2e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30337328Brassica junceaCynara cardunculus26.7719.6189.39132forward

Expression of CNT3080234

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MVSEILQRSLTSDNGLNEESKHREHSQSSVLDLLHLQLCKSLWVGS*

>peptide 2 (44 aa)
MGRSCLLDKATSRPFRRRQGRREPLLKRPLKFLFFFVFFLVTDL*

Sequence

>CNT3080234
ATGATAAATCATACAAAGACTTGACAAATTTTTACATCTGAAAGTCTCAGCCACCCATCACAAACACAAAACCCTTTCCTCACTCTCACTCGAATTTCGA
AAAGACAGAAGCAAATTACAAACTGATAAAACTTCGCTCACTTTCCGGGAACGAAGTTGGTGGCGAAGGCCCATGCGTTGTTGTTGACTGGATCAGCCAA
ATGGTCAGCGAGATTCTCCAACGGTCCCTTACCAGTGACAATGGCTTGAACGAAGAATCCAAACATAGAGAACATAGCCAATCTTCCGTTCTTGATCTCC
TTCACCTTCAACTCTGCAAAAGCCTCTGGGTCGGTAGCTAGGCCCAATGGGTCGAAGCTGCCTCCTGGATAAAGCAACTTCACGGCCTTTCCGGCGAAGG
CAGGGGAGGAGAGAGCCATTGTTGAAGAGGCCATTGAAGTTTCTTTTTTTTTTTGTTTTTTTTTTGGTGACTGACTTGTGAGTGAGAGTGATT