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Detailed information on CNT30337328


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 6e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30234848Cynara cardunculusBrassica oleracea28.8330.1785.05194forward
CNT3080234Cynara cardunculusBrassica juncea19.6126.7789.39132forward
CNT30263808Cynara cardunculusBrassica rapa20.2129.3786.03136forward

Expression of CNT30337328

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MLFHLFSVLSCPNLNAAPHWRREVFVFSCPNLNAAPHWRREVFVFSCPTYQTRRNKTTKRNTCMQVKY*

>peptide 2 (54 aa)
MQKSKPMLNKCKIRTNLLKNSHMLLHINSQTLHLSKLSHIYTCQVYFPGTKFVA*

>peptide 3 (48 aa)
MPHHTGDEKFLYSPVPRTKHVGTKQPKEIHVCKLNTNQIQCEQLTCRK*

Sequence

>CNT30337328
TAAGTGACATGGCTGTTTTGTAATTTACAGATCTTGTCCCATCTCCCTCATGTTGTTCCATCTATTTTCAGTTTTATCCTGTCCCAATCTAAATGCCGCA
CCACACTGGAGACGAGAAGTTTTTGTATTCTCCTGTCCCAATCTAAATGCCGCACCACACTGGAGACGAGAAGTTTTTGTATTCTCCTGTCCCACGTACC
AAACACGTAGGAACAAAACAACCAAAAGAAATACATGTATGCAAGTTAAATACTAATCAAATACAATGCGAGCAACTAACTTGTAGAAAGTGACTTGACT
TCAACCATGATGTTTGCTAAGTAATGAGCAGGTATAGGTCATGCAGAAAAGTAAACCAATGCTAAACAAATGTAAAATTAGAACAAACTTGCTCAAAAAC
AGCCATATGCTATTGCATATTAATTCACAAACATTGCATTTATCTAAATTATCTCATATATATACATGCCAAGTTTACTTTCCAGGGACGAAGTTTGTAG
CATAGGACCAAGCATTGTTGGCAACGGGGTCAGCTACATGGTCAGCTAGGTTCTCCAATGGTCCCTTTCCAGTCACAATGGCTTGAACAAAAAATCCAAA
CATAGAGAACATGGCTAGCCTACCGTTCTTTATCTCCTTCACCTTCAGCTCTGCAAAAGCCTCTGGGTCATCG