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Detailed information on CNT3077878


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30311533Brassica junceaCamelina sativa97.4388.5495.9757forward

Expression of CNT3077878

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MPRHLIMTLMNGLTRFPLSLSTIQRNHSQGNGLGRISGER*

>peptide 2 (32 aa)
SPGVEQPTQNWYGQGESDCLIKTKHCDGPCGC*

Sequence

>CNT3077878
TTTCCCCGGGCGTCGAACAGCCAACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCCTGCGGATGCTA
ACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGC
CAAATGCCTCGTCATCTAATTATGACGCTCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGC
TTGGCAGAATCAGCGGGGAAAGATGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGAATAAGTGGGAGCTCCGGCGC
AAGTGAAATACCACTACTTTTAACGTTATTTTACTTACTCCGTGAATCGGAGGCGGGGTAACAACCCCTTCTTTTAGACCCAAGACTCGCTTCGGCGGGT
CGATCCGGGCGGAGGACATTGTCAGGTGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGAATAAGTG
GGAGCTCTGGCGCAAGTGAAATACCACTACTTTTAACATTATTTTACTTACTCCGTGAATCGGAGGCGGGGTAACAACCCCTTCTTTTAGACCCAAGACT
CGCTTCGGCGGGTCGATCCGGGCGGAGGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGAT