Detailed information on CNT30311533


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3077878Camelina sativaBrassica juncea88.5497.4395.9757forward

Expression of CNT30311533

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MNGLTRFPLSLSTIQRNHSQGNGLGRISGERRPC*

>peptide 2 (55 aa)
NPSAVGGLLELLPRRERFAACWPGDGLGTAPSGAFPGHRTVSSELVRTRGIRLFN*

>peptide 3 (55 aa)
MPRHLISDAHEWINEIPTVPVYYPAKPQPRERAWQNQRGKKTLLSLTLVRLCEMT*

>peptide 4 (53 aa)
PVGCRWTARAASAARAVRCVLAGGRTGNGSFGSFPRASNSQLRTGTDKGNPTV*

>peptide 5 (42 aa)
MGYNPCFWSQGLLRWADPGGGHCQRGKKTLLSLTLVRLCEMT*

>peptide 6 (66 aa)
TRRLSVDCSSCFRGESGSLRAGRGTDWERLLRELSPGIEQSAQNWYGQGESDCLIKTKHCDGPCGC*

Sequence

>CNT30311533
AACCCGTCGGCTGTCGGTGGACTGCTCGAGCTGCTTCCGCGGCGAGAGCGGTTCGCTGCGTGCTGGCCGGGGGACGGACTGGGAACGGCTCCTTCGGGAG
CTTTCCCCGGGCATCGAACAGTCAGCTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCTTGCGGATGCT
AACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAG
CCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGG
GCTTGGCAGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGAGCTCCGGC
GCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTACTCCGTGAATCGGAGATGGGGTACAACCCCTGTTTTTGGTCCCAAGGCTTGCTTCGGTGGG
CCGATCCGGGCGGAGGACATTGTCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTG
GGAGCTCCGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTACTCCGTGAATCGGAGGCGGGGTACAACCCCTGTTTTTGGTCCCAAGACTC
GCTTCGGCGGGTCGATCCGGGCGGAGGACATTGTCAGGCGGGGAGTTTGACTGGG