Detailed information on CNT3076541


BLAST search results

BLAST vs Swiss-Prot:
sp|P82729|DF137_ARATH, E-value = 4e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30234497Brassica junceaBrassica oleracea31.5339.6695140forward

Expression of CNT3076541

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MKNAFQPPLIGRVMLTILLFGVMTIAQKRGPPSKPKTCIDMYPINKGECDITQCRTECIKKRKGDSFCTKKSDGTSDCVCLYSC*

>peptide 2 (53 aa)
KHIYLIIKDEKCFSTSAYWSCYAHNSSFRSNDDCSEKRTTVKTKNLYRHVPNQ*

Sequence

>CNT3076541
AAAACACATTTATTTAATTATCAAAGATGAAAAATGCTTTTCAACCTCCGCTTATTGGTCGTGTTATGCTCACAATTCTTCTTTTCGGAGTAATGACGAT
TGCTCAGAAAAGAGGACCACCGTCAAAACCAAAAACTTGTATCGACATGTACCCAATCAATAAAGGAGAATGTGATATTACTCAATGTAGAACTGAATGT
ATCAAAAAAAGGAAAGGGGATAGTTTTTGCACTAAAAAAAGCGACGGAACGAGTGACTGCGTATGCCTTTATAGTTGTTAACCCTGATTTTTTATCTACA
TTAAAACTCAAATAATATTTATAATAATACATGACTTTATCAAAGAAAAAATAACAATATTATTAATTGTTGTTAGTTTTGTAGCATAATAAAGTGTATT
AAGTTGCCAAATCTAAATAAAAATAACAAATATTGATATGTCGG