Detailed information on CNT30722140


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224819Triticum speltaHordeum vulgare54.8874.592.28298reverse complement
CNT30393731Triticum speltaTriticum turgidum54.786.8495.96297reverse complement

Expression of CNT30722140

SRR9114152: 185.43 RPKM

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MTAWSSDSWRVCCYGCGSCLTCVMSNLAV*

>peptide 2 (37 aa)
MWGLYVFVTEFYAPINFAASHLFCDAMMLYVSKILDD*

>peptide 3 (35 aa)
EPPPPTIYGDRVRPHTSAAAADDAKRRARPTPPPR*

>peptide 4 (79 aa)
SPRRQQSTEIGFVHTLPPPPPTTRKGERGRLRRRDEGQVEEEEDEEAQEEAPKDEAAIQVGALEQRKHHPTSRLPGTEG*

>peptide 5 (59 aa)
APAANNLRRSGSSTHFRRRRRRREKESEADSAAAMRAKWKKKRMRRLKRKRRKMRQRSK*

Sequence

>CNT30722140
GAGCCCCCGCCGCCAACAATCTACGGAGATCGGGTTCGTCCACACACTTCCGCCGCCGCCGCCGACGACGCGAAAAGGAGAGCGAGGCCGACTCCGCCGC
CGCGATGAGGGCCAAGTGGAAGAAGAAGAGGATGAGGAGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGCGATCCAAGTAGGCGCCTTGGAGCAGCGGA
AGCATCATCCTACATCCAGGCTGCCAGGCACCGAGGGATGACGGCATGGTCTAGTGATTCCTGGCGTGTTTGCTGCTATGGCTGTGGAAGCTGTTTAACC
TGTGTTATGTCCAATTTAGCTGTTTAATTCTAGTCTGGTTATGTTCCAAGACAGAGTTTTATGTAATGTGGGGATTATATGTGTTTGTGACTGAATTTTA
TGCACCTATTAATTTTGCGGCGTCTCATCTTTTTTGTGATGCGATGATGCTATATGTTTCTAAAATTTTAGATGATTAATATCTGTTATGCCTTCTGAAT
GGTTGAAATATTACAATGCATGTATTAGAAATGATAAAGCCAA