Detailed information on CNT30721669


BLAST search results

BLAST vs Swiss-Prot:
sp|P15490|VSPA_SOYBN, E-value = 1e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521006Triticum speltaSetaria italica35.5230.5290.78141forward
CNT30186478Triticum speltaSecale cereale101.2666.2388.81402forward
CNT30297202Triticum speltaTriticum aestivum68.2669.67100271forward
CNT30663653Triticum speltaTriticum dicoccoides21.4134.4196.4785forward
CNT30684963Triticum speltaTriticum urartu12.3422.0797.9649forward
CNT30370318Triticum speltaOryza glumipatula37.7816.389.33150forward
CNT30576270Triticum speltaOryza barthii20.9114.0987.9583forward
CNT30116655Triticum speltaOryza nivara36.5214.4486.9145forward

Expression of CNT30721669

SRR9114152: 42.78 RPKM

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MGSGSLKVRAPSGAPRMSLHWSPILPTMTYPASCSFCLSPDL*

Sequence

>CNT30721669
TGGATCAATTGATTAAAGAACATGCAACTTCTCCACGAACACATTCATAATAGCATTTAATCTCAAGTTCTCGACAATGGAAATGAACGAAGCAACAACT
GGGGAGGGATTATTGGCTAAACATGAATATAACTAAGAGCATGGAGCTTATTCGATCGAGAAATCAATGACGGCATGCCCGAGCCGGAGGCAGCCTAGCC
GATGTAGTACATGGGGTCTGGCAGCTTGAAAGTGCGGGCGCCCTCAGGCGCGCCGAGGATGTCACTCCACTGGTCGCCGATATTGCCGACGATGACGTAC
CCGGCGTCCTGCAGCTTCTGCCTCTCGCCGGACTTGTAGGTCACCGCGGAGCCCTTGAAGCCGGGCTGCTTCAGCAGCAGGTTCATCCAGCCGGAGA