Detailed information on CNT30186478


BLAST search results

BLAST vs Swiss-Prot:
sp|P15490|VSPA_SOYBN, E-value = 3e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672364Secale cerealeSetaria viridis9.0624.4492.7355forward
CNT30521006Secale cerealeSetaria italica23.2330.5287.94141forward
CNT30297202Secale cerealeTriticum aestivum63.5999.2391.71386forward
CNT30663653Secale cerealeTriticum dicoccoides40.3699.1994.69245forward
CNT30684963Secale cerealeTriticum urartu36.4199.5593.21221forward
CNT30721669Secale cerealeTriticum spelta66.23101.2688.81402forward
CNT30370318Secale cerealeOryza glumipatula22.5714.8988.32137forward
CNT30101936Secale cerealeOryza rufipogon15.6522.3584.2195forward
CNT30116665Secale cerealeOryza nivara15.4924.7489.3694forward

Expression of CNT30186478

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MALWSSVRPVRNTGLMPTERSLLYSRFVSGSAGALPSST*

>peptide 2 (42 aa)
MGSGSLKVRAPSGAPRRSLHWSPMLPTMTNPAACNFCLSPDL*

>peptide 3 (29 aa)
MDFSQKKTVDPLIKQHANSPRTSLIHNSN*

Sequence

>CNT30186478
CATGGATTTCTCGCAAAAGAAAACAGTGGATCCATTGATTAAGCAACATGCAAATTCTCCACGAACAAGTCTAATTCACAATAGCAATTAATTTCAAGTT
CTCAACAATGGAAATGAACCAAGCAACAACATAGGAGGGATTATTGACTAAACATGCATATAACTTAGGGCATGGAGCTTATTCGAGACATCAATGGCGG
CATGCCCGAGTTGGAGGTGGCCTAGCCGATGTAGTACATGGGGTCGGGCAGCTTGAAGGTGCGGGCGCCCTCAGGCGCGCCGAGGAGGTCACTCCACTGG
TCGCCGATGTTGCCGACAATGACAAACCCGGCGGCCTGCAACTTCTGCCTCTCGCCAGACTTGTAGGTCACCGCGGAGCCCTTGAACCCGGGCTGCTTCA
GCAACAGGTTCATCCACCCGGAGATCCCCTGGCGGCGGAGGTTGGTGACGGTGATGGCCCTCTGGTCCTCGGTCCGTCCGGTGAGGAATACTGGCTTGAT
GCCGACCGAGCGCAGCTTGTTGTACAGCCGCTTTGTCTCCGGCAGCGCTGGTGCGCTCCCCTCCAGCACATAAGCGTTGAAGCTCGTCGCGTTGAAAGGT
GTAGCCC