CANTATAdb - search

Detailed information on CNT30708805

BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H1E4|RAP24_ARATH, E-value = 1e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3085218	Glycine max	Vigna radiata	28.65	20.62	93.46	153	forward
CNT30176294	Glycine max	Vigna angularis	28.65	48.88	92.16	153	forward

Expression of CNT30708805

Peptides detected in this lncRNA

>peptide 1 (30 aa)
EAWRQRRNEEAYTPRSHHRRRNPGVGGWGI*

>peptide 2 (47 aa)
LKLGVNGGMKRLILPEVTTDGGTLVSEVGESNLSHPLPPVPLSNPSV*

>peptide 3 (63 aa)
MGLGGSGPQEMWAALARNQLSFGWCWVWMITRLSIGRESSWVEKGLFIKGSRTSISSPLNGSE*

Sequence

>CNT30708805
CTGAAGCTTGGCGTCAACGGCGGAATGAAGAGGCTTATACTCCCCGAAGTCACCACCGACGGAGGAACCCTGGTGTCGGAGGTTGGGGAATCTAATCTCA
GCCACCCACTTCCCCCAGTGCCTCTGTCGAACCCCTCTGTATAGCTTCGTGGGCTTCGGAGGCATGCCCACGTGCTTCATAGGGATGGGCTTCGGCCCCA
GGAAGCTCAGCGTGTTGCTGTGATTCTGGATCTGGATTTGGGCCTGGATCTGAGAGATCTGAGATGGGGTTAGGTGGTTCAGGCCCACAAGAGATGTGGG
CTGCCCTTGCCCGAAACCAATTAAGTTTTGGGTGGTGTTGGGTATGGATGATAACCCGTTTGAGTATAGGGAGGGAGAGTAGTTGGGTTGAGAAAGGACT
TTTCATAAAAGGTTCAAGAACTTCCATTAGTTCACCCCTGAATGGATCTGAGTGAAGTTGAAACTCTGTGCTGCTGCTGTAAAAATCCATCATAGCTGCC
ATGATAATTCAACCTGCGTCTTTCTAAAACTGAA