Detailed information on CNT30696319


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30103117Oryza sativaOryza rufipogon21.628.6785.26312reverse complement

Expression of CNT30696319

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MKNGMDPCCTSTCRSDIWMDGIHLCYLLKTHHQQLAAGRGKGKMKICPFQKARVEAESWARCCTGSQAHTLLALASTSGDLEAPM*

>peptide 2 (45 aa)
MEEDKDEASHPTLLLKSILSGTGKTQDLEARWSIKCVHSWHGAKM*

>peptide 3 (34 aa)
MAPKCEADAQQAQGRRARGQSDKASTVDDLRQEG*

>peptide 4 (47 aa)
MEYKVCAFMAWRQNVKLMPNKLKDDVLEDNRIKPPLLMICGKRDSDT*

>peptide 5 (46 aa)
MCLNIRCDRVKNFCVGTKESLRICHCTYLLYTCIRTQDTEYGRKLCR

>peptide 6 (58 aa)
MPPQLNFIHVTTNFWSLKGHCVGITENQVDQRGSMKHENLLLVGWKRTRMRLAIPLSY*

>peptide 7 (49 aa)
MGQVLHRLTGTHTACFGFHQWRPGGTDVSIAGCRCWRKPRQERMAEEER*

Sequence

>CNT30696319
TGCCCGGACTGAGCGCATGTCATTTGGTGATCTTTTTAGCTGAATCTGCAATGGTGAATATTTCTTAGATCCATCAATGAGGCAGATAGGCAGATGGCAT
TAAGGTGAGCCATCACCATCAGCCATCCGTGGCTCGTCGGTGGATGGAGCAACAAAGCAATCAAGAAAGTAACATGAATGTCATTAGTAGTTGCAGAGAG
GCCATGTAACCAAAATTAAGTGTCACTCGGTGCTGACTGGAGAGATGCCACCCCAATTGAACTTCATCCATGTAACGACGAATTTTTGGTCATTGAAGGG
TCACTGTGTGGGCATCACTGAAAACCAAGTTGATCAGAGGGGATCCATGAAGCATGAAAACCTCCTACTTGTCGGATGGAAGAGGACAAGGATGAGGCTA
GCCATCCCACTCTCCTACTGAAGAGCATCTTGTCAGGAACAGGGAAGACCCAGGATTTGGAAGCTAGATGGAGTATAAAGTGTGTGCATTCATGGCATGG
CGCCAAAATGTGAAGCTGATGCCCAACAAGCTCAAGGACGACGTGCTAGAGGACAATCGGATAAAGCCTCCACTGTTGATGATCTGCGGCAAGAGGGATA
GTGACACTTGACCATGGTAAAAAAAAAATGAAGAACGGAATGGATCCATGCTGTACTAGTACGTGCAGATCAGACATCTGGATGGATGGCATTCATCTCT
GTTACCTTCTGAAAACGCATCATCAGCAGCTGGCAGCAGGGAGGGGAAAAGGGAAGATGAAAATTTGCCCGTTTCAGAAGGCAAGGGTGGAAGCAGAATC
ATGGGCCAGGTGCTGCACAGGCTCACAGGCACACACACTGCTTGCTTTGGCTTCCACCAGTGGAGACCTGGAGGCACCGATGTGAGCATAGCAGGCTGTC
GTTGTTGGCGAAAGCCGCGGCAAGAGAGGATGGCAGAGGAAGAAAGGTGAGGTACTGCAATGCTGTCTACTGCTCGTGCAGTACATTAGCATATACTACC
TCCGTTTCATAGTACTACTCAGGCCCTGTTTAGTTCAAGGGTGAAAAGTTTTGACGTGTCACATTGGATATACGGACACACGTTTGAAGTATTAAGCGTA
GTCTAATAACAAAACAAATTACATATTCCGACTGTAAACTGCGAGACGAATTTATTAAGTCTAATTAATCTATCATTATCAAATGTTCACTGTAGTACCA
TATTGTCAAATGGTGGCGTAATTAGGCTTAAAAGATTCGTCTCACAATTTACACGCAATATGTGTAATTAGATTTTTTTATCTATATTTAATACTCCATA
CATGTGTTTAAATATTCGATGTGACAGGGTGAAAAATTTTTGCGTGGGAACTAAAGAGAGCCTCAGAATTTGTCACTGCACCTATCTGTTGTATACTTGT
ATACGGACACAGGACACTGAGTATGGCCGTAAACTGTGCCGGG