Detailed information on CNT30694110


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30184122Oryza sativaSecale cereale12.9328.8289.898forward
CNT30576773Oryza sativaOryza barthii51.4577.8499.49390forward

Expression of CNT30694110

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MFTLPLMTSSSFSASISWTLVLFMLTLAM*

>peptide 2 (30 aa)
MIVITFKPAFPFATVTVSPLLQTSCEPFEG*

>peptide 3 (37 aa)
MDSLAQANHVPLDTHLTFQQKMKCSLGRKRKLPCDFVS

>peptide 4 (38 aa)
MFKEGEKDVLKFVSCVATSSIYLWIHLHKQIMFHWIHI*

>peptide 5 (74 aa)
MRDYNLQALPQMIPVGMKKAKHDKHLNMSGDSCPCLSESPFELCMSCNWDRTGHEFLAHQEFSQGHTLQCSLCP*

>peptide 6 (49 aa)
MSFLLIKNFLKVILFNVHFALNDIFILLSFNFMDTSFVHADIGNVKRTI*

Sequence

>CNT30694110
GCTAAATAACATTTCTATTTCATTTAGCAAATATGCTAAGCTTCAGGTGATGAATGCGTGATTACAATTTACAAGCGCTTCCCCAAATGATACCTGTTGG
AATGAAGAAGGCGAAGCATGATAAACATCTGAATATGTCAGGTGACTCTTGCCCTTGTCTTTCAGAATCACCCTTTGAGTTATGCATGAGTTGCAATTGG
GACAGAACAGGTCATGAGTTTCTTGCTCATCAAGAATTTTCTCAAGGTCATACTCTTCAATGTTCACTTTGCCCTTAATGACATCTTCATCCTTCTCAGC
TTCAATTTCATGGACACTAGTTTTGTTCATGCTGACATTGGCAATGTGAAGAGAACCATTTGAGTTTGCCAGGCCGTTTTGGTTCTTGTCAATGATTGTG
ATCACTTTCAAGCCTGCTTTTCCATTTGCAACTGTAACTGTTTCACCACTGTTACAGACTTCATGTGAACCATTTGAAGGATAACATTTCTGGATGGACC
ACTCAAGAGGTATGTCCAATCGCAGTGACGGCACTTCCATAACCCTTCAGCAAAGAAATAAATGACTATCTTTAAATGTTTAAAGAGGGGGAAAAAGATG
TCCTAAAGTTTGTATCTTGTGTTGCTACCAGTAGTATTTATCTATGGATTCACTTGCACAAGCAAATCATGTTCCATTGGATACACATTTAACATTCCAA
CAGAAGATGAAGTGTAGCCTTGGAAGAAAGAGAAAATTACCATGTGATTTTGTAAGTA