Detailed information on CNT30184122


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8LPT3|MEBL_ARATH, E-value = 5e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694110Secale cerealeOryza sativa28.8212.9389.898forward
CNT30576773Secale cerealeOryza barthii28.8219.5690.8298forward

Expression of CNT30184122

Peptides detected in this lncRNA

>peptide 1 (72 aa)
PVGMKKEKHDKHLNTSGDSSSTLSGKGTGGTCPSIFGLFDGSTVGVVLTVLFLFFRITLLVMHDLQLGQNRS*

>peptide 2 (47 aa)
MTCSWDRTGHEFLAHPKSSPGRTLRPSVEPRRPVRPCQLQLGIFQSC*

>peptide 3 (40 aa)
MSFLLIQNLLQVVLFDLRLSLGGLFVLVNFSWVYFSLVDFK

Sequence

>CNT30184122
CCTGTTGGAATGAAGAAGGAGAAGCATGACAAACATCTGAATACGTCTGGTGATTCATCCTCAACCCTATCAGGTAAAGGAACAGGAGGCACCTGTCCTT
CAATATTCGGTCTCTTTGATGGTTCAACGGTGGGTGTTGTTCTTACTGTCCTTTTCCTCTTCTTCAGGATCACCCTTCTAGTTATGCATGACTTGCAGTT
GGGACAGAACAGGTCATGAGTTTCTTGCTCATCCAAAATCTTCTCCAGGTCGTACTCTTCGACCTTCGGTTGAGCCTCGGCGGCCTGTTCGTCCTTGTCA
ACTTCAGTTGGGTATATTTCAGTCTTGTTGATTTCAAACA