Detailed information on CNT30692068


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6END8|RR8_ORYNI, E-value = 1e-84

BLAST vs NONCODE:
NONOSAT001021, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641762Oryza sativaNymphaea colorata21.5612.3386.21428forward

Expression of CNT30692068

Peptides detected in this lncRNA

>peptide 1 (81 aa)
NIPLGRASITKPSKVIFASLGFFFSLLFFFFVIFFSPIFLFLFENKKTLYFCLKNRKFKIEFGYYNYRWGDYRYRRGDYHI*

>peptide 2 (79 aa)
MYLDFSTMTCISCHCSSSRFYLPRRNPSGFKCLKSISTKTNTIASVGFSLHSSSMLFTKSGSFGVIVDGSLLVPSLLQK*

>peptide 3 (47 aa)
MQKDERNIVFPEKRTWFFIFNTTFFGGVIFLTEEIDFIWAFCWQLWK*

>peptide 4 (37 aa)
MFSVIFVDTTRTVPFLFMSTFLTEVSKSAIVSLPIRL*

>peptide 5 (30 aa)
MFSFFFSFWILKHIRETQSTNFLFDLYLVY*

>peptide 6 (31 aa)
MATQYSGDPFPEPIRVSVGLIVTGLSGNICT*

Sequence

>CNT30692068
GAACATTCCGTTGGGTAGGGCTTCCATAACTAAACCCTCGAAAGTAATTTTTGCTTCTCTCGGGTTTTTTTTTTCTCTCCTATTTTTCTTTTTTGTCATA
TTTTTTTCTCCTATTTTTCTTTTTTTATTTGAAAATAAAAAAACGTTGTATTTTTGTTTGAAAAATAGGAAGTTCAAGATAGAATTTGGGTACTATAACT
ATAGGTGGGGCGATTACCGCTATAGGCGAGGCGATTACCATATATAACATAAGACTTCTCCCCCAATTTTGTTTAGTCAAGCTTCTCGATCTGTCATTAT
ACCTCGAGAAGTAGAAAGAATAGCAATTCCCATTCCGCCCAAAACCTTAGGAATTCCTTGATAGTTGGCATAAATTCGTAAGCCAGGTCGGCTGATACGC
TTTAAAAAGGTTCTAGTTCTATATATTCCCTTTCTAGTCTTTCTCTTTTGATGTCGCAAAGTTGAAACCAAGAAATATCTGTTACTTTCCTGATGTTTCC
GAACACTTTCAATAAAACCCTCTCGTAGAAGTAGTTTAACAATGTTTTCGGTAATATTTGTAGATACTACCCGAACAGTTCCTTTTTTATTCATGTCCAC
GTTTCTTACAGAGGTTAGTAAATCAGCAATAGTGTCCTTGCCCATAAGACTCTAATTCTAGGTTCCTCCTAATTTTTCTATAATCAACATGTTCTCTTTT
TTCTTTTCGTTTTGGATTCTAAAGCATATACGTGAAACACAATCTACTAATTTTTTATTTGATCTATATCTTGTCTACTAGTATTTATAATACTTCAGGA
GCTAATGAAACTATTTTAGTAAAATTCAATTCTCTCAATTCCTAGGCGATCGCGCCAAAAACGCGAGTTCCTTTTGGATTTCCTTTTTATCAATGATAAC
CGCTGCATTGTCGTCATACCGCGATTCAATAAGAGTAAAATAAAAAAAGGAGATTAAAAAAAGAATTACATTAAATATAGAATATAGATAAATAAACATA
CACATCTAGATATATTCTAGATCCTCTTTCTTGACCATATATTTTAGTATTTTAATAAATTCAATATTAAAAACCCTAACCTTTCCTATTATTGTGTAGC
GTATTATTATACCGTCTTCGCATTTGAACTCTTTACATGTACGTACAATTACAGCTCGAATTACTTCGGATCTTTCTAGAGGCATTTGGGGCACTGCGTC
TTTGATTACAGCAACAATAACATCACCAATACGAGCATATCGCTGATTACTAGCAGCTCTTATGACTCGAATACACATCAATTTTCGAGCTCCACTGTTA
TCTGCTACATTTAAAAGGGTCTGAGGTTGAATCATATTATTTTGATTTCAATTTGTTATTTCAATGCAAAAGGATGAAAGAAATATTGTTTTTCCAGAAA
AAAGAACCTGGTTTTTTATTTTCAATACTACTTTTTTTGGGGGGGTTATATTTCTAACCGAAGAAATTGACTTCATATGGGCATTTTGCTGGCAGCTATG
GAAATAGCTGCTCTAGCTACAGTTTCGGATACTCCGCCCATTTCATAAAGTATTCTACCTGGTTTAACAATGGCTACCCAATATTCGGGGGATCCCTTTC
CCGAACCCATACGTGTTTCCGTTGGTCTTATTGTAACCGGTTTGTCGGGAAATATATGTACCTAGATTTTTCCACCATGACGTGCATATCGTGTCATTGC
TCTTCGTCCCGCTTCTATCTGCCTCGCCGTAATCCAAGTGGGTTCAAGTGCTTGAAGAGCATATCTACCAAAACAAATACAATTGCCTCGGTAGGATTTT
CCCTTCATTCTTCCTCTATGTTGTTTACGAAATCTGGTTCTTTTGGGGTTATAGTCGATGGTTCTCTCTTAGTTCCATCTCTACTGCAAAAGTAGACATG
AGAGTTTCTTCTCATCCAGCTCCTCGCGAATCAAATGAGAAAGTGTGCAAATTTCTCTAATTCCACAATATTCTAAAATATTACG