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Detailed information on CNT30687477


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 6e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30227157Triticum urartuHordeum vulgare34.8242.9194.27227forward

Expression of CNT30687477

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MACTKYPNMENIARRPFLISFTLSSANASGSSARPRGSKLPPG*

>peptide 2 (39 aa)
MVTRPPPSAYEAPASLIAGEESAIVVEAAIAAGWNRASC*

>peptide 3 (69 aa)
MCLLAGHKVGGEGPRVVVDGVGEVVSEVLKRTLTGDDGLHKVSKHGKHCKAAVLDLLHLELGKRLWVVS*

Sequence

>CNT30687477
GCAAACCCAAACAATTAATGTCCACTCGTATTCATATGGAAAATGAAAACCATGCATTTCTCATATAGACATTTCATGTTCCAGATGGGCGCTATTTGTA
AACATCTTTGATAGTGTACAACATCAACGATCAGATATTAATCATACATCCAGAGCACACATATACTCCTGAGAAGTCGATTTTCATGTGTTTACTTGCC
GGGCACAAAGTTGGTGGCGAAGGCCCACGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCAGCGAGGTTCTCAAGCGGACCCTTACCGGTGACGATGGCC
TGCACAAAGTATCCAAACATGGAAAACATTGCAAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCGGCAAACGCCTCTGGGTCGTCAGCTAGGCCAA
GGGGGTCGAAGCTGCCACCGGGGTAGAGCACACGGTCGGGGCCGTACCAGGGGCTGTTGGAGGCGGCGGCCTTGGGCGTGGCCTTGCGCATGGTGACGCG
GCCGCCGCCGAGCGCGTACGAGGCTCCGGCGAGCTTGATCGCGGGGGAGGAGAGCGCCATTGTGGTGGAGGCCGCCATTGCTGCCGGATGGAACAGAGCA
AGCTGCTGATGTGCGGCTGCCGCTGCTACTGATGGGTGGCTGCGTGAGGAAG